test_gmx_check_container.py source

1 # type: ignore

2 import pytest

3 from biobb_common.tools import test_fixtures as fx

4 from biobb_analysis.gromacs.gmx_check import gmx_check

5 import sys

6

7

8 class TestGMXCheckDocker():

9 def setup_class(self):

10 fx.test_setup(self, 'gmx_check_docker')

11

12 def teardown_class(self):

13 fx.test_teardown(self)

14 pass

15

16 def test_check_docker(self):

17 gmx_check(properties=self.properties, **self.paths)

18 assert fx.not_empty(self.paths['output_log_path'])

19 assert fx.equal(self.paths['output_log_path'], self.paths['ref_output_log_path'])

20

21

22 @pytest.mark.skipif(sys.platform == 'darwin', reason="singularity not available on macOS")

23 class TestGMXCheckSingularity():

24 def setup_class(self):

25 fx.test_setup(self, 'gmx_check_singularity')

26

27 def teardown_class(self):

28 fx.test_teardown(self)

29 pass

30

31 def test_check_singularity(self):

32 gmx_check(properties=self.properties, **self.paths)

33 assert fx.not_empty(self.paths['output_log_path'])

34 assert fx.equal(self.paths['output_log_path'], self.paths['ref_output_log_path'])