test_gmx_check_container.py source

1 # type: ignore

2 import pytest

3 from biobb_common.tools import test_fixtures as fx

4 from biobb_analysis.gromacs.gmx_check import gmx_check

5

6

7 class TestGMXCheckDocker():

8 def setup_class(self):

9 fx.test_setup(self, 'gmx_check_docker')

10

11 def teardown_class(self):

12 fx.test_teardown(self)

13 pass

14

15 def test_check_docker(self):

16 gmx_check(properties=self.properties, **self.paths)

17 assert fx.not_empty(self.paths['output_log_path'])

18 assert fx.equal(self.paths['output_log_path'], self.paths['ref_output_log_path'])

19

20

21 @pytest.mark.skip(reason="singularity currently not available")

22 class TestGMXCheckSingularity():

23 def setup_class(self):

24 fx.test_setup(self, 'gmx_check_singularity')

25

26 def teardown_class(self):

27 fx.test_teardown(self)

28 pass

29

30 def test_check_singularity(self):

31 gmx_check(properties=self.properties, **self.paths)

32 assert fx.not_empty(self.paths['output_log_path'])

33 assert fx.equal(self.paths['output_log_path'], self.paths['ref_output_log_path'])