Coverage report: 78%

Files Functions Classes

coverage.py v7.9.1, created at 2025-06-19 15:08 +0000

File function statements missing excluded coverage
biobb_flexserv/__init__.py (no function) 5 0 0 100%
biobb_flexserv/flexserv/__init__.py (no function) 5 0 0 100%
biobb_flexserv/flexserv/bd_run.py BDRun.__init__ 11 0 0 100%
biobb_flexserv/flexserv/bd_run.py BDRun.launch 18 5 0 72%
biobb_flexserv/flexserv/bd_run.py bd_run 1 0 0 100%
biobb_flexserv/flexserv/bd_run.py main 10 10 0 0%
biobb_flexserv/flexserv/bd_run.py (no function) 14 1 0 93%
biobb_flexserv/flexserv/dmd_run.py DMDRun.__init__ 11 0 0 100%
biobb_flexserv/flexserv/dmd_run.py DMDRun.launch 31 5 0 84%
biobb_flexserv/flexserv/dmd_run.py dmd_run 2 1 0 50%
biobb_flexserv/flexserv/dmd_run.py main 10 10 0 0%
biobb_flexserv/flexserv/dmd_run.py (no function) 14 1 0 93%
biobb_flexserv/flexserv/nma_run.py NMARun.__init__ 10 0 0 100%
biobb_flexserv/flexserv/nma_run.py NMARun.launch 21 5 0 76%
biobb_flexserv/flexserv/nma_run.py nma_run 2 1 0 50%
biobb_flexserv/flexserv/nma_run.py main 10 10 0 0%
biobb_flexserv/flexserv/nma_run.py (no function) 15 1 0 93%
biobb_flexserv/pcasuite/__init__.py (no function) 13 0 0 100%
biobb_flexserv/pcasuite/pcz_animate.py PCZanimate.__init__ 10 0 0 100%
biobb_flexserv/pcasuite/pcz_animate.py PCZanimate.launch 14 1 0 93%
biobb_flexserv/pcasuite/pcz_animate.py pcz_animate 2 1 0 50%
biobb_flexserv/pcasuite/pcz_animate.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_animate.py (no function) 16 1 0 94%
biobb_flexserv/pcasuite/pcz_bfactor.py PCZbfactor.__init__ 10 0 0 100%
biobb_flexserv/pcasuite/pcz_bfactor.py PCZbfactor.launch 17 1 0 94%
biobb_flexserv/pcasuite/pcz_bfactor.py pcz_bfactor 2 1 0 50%
biobb_flexserv/pcasuite/pcz_bfactor.py main 10 10 0 0%
biobb_flexserv/pcasuite/pcz_bfactor.py (no function) 16 1 0 94%
biobb_flexserv/pcasuite/pcz_collectivity.py PCZcollectivity.__init__ 9 0 0 100%
biobb_flexserv/pcasuite/pcz_collectivity.py PCZcollectivity.launch 22 1 0 95%
biobb_flexserv/pcasuite/pcz_collectivity.py pcz_collectivity 2 1 0 50%
biobb_flexserv/pcasuite/pcz_collectivity.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_collectivity.py (no function) 17 1 0 94%
biobb_flexserv/pcasuite/pcz_evecs.py PCZevecs.__init__ 9 0 0 100%
biobb_flexserv/pcasuite/pcz_evecs.py PCZevecs.launch 36 1 0 97%
biobb_flexserv/pcasuite/pcz_evecs.py pcz_evecs 2 1 0 50%
biobb_flexserv/pcasuite/pcz_evecs.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_evecs.py (no function) 18 1 0 94%
biobb_flexserv/pcasuite/pcz_hinges.py PCZhinges.__init__ 10 0 0 100%
biobb_flexserv/pcasuite/pcz_hinges.py PCZhinges.parse_output 72 46 0 36%
biobb_flexserv/pcasuite/pcz_hinges.py PCZhinges.launch 18 1 0 94%
biobb_flexserv/pcasuite/pcz_hinges.py pcz_hinges 2 1 0 50%
biobb_flexserv/pcasuite/pcz_hinges.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_hinges.py (no function) 19 1 0 95%
biobb_flexserv/pcasuite/pcz_info.py PCZinfo.__init__ 8 0 0 100%
biobb_flexserv/pcasuite/pcz_info.py PCZinfo.launch 37 1 0 97%
biobb_flexserv/pcasuite/pcz_info.py pcz_info 2 1 0 50%
biobb_flexserv/pcasuite/pcz_info.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_info.py (no function) 17 1 0 94%
biobb_flexserv/pcasuite/pcz_lindemann.py PCZlindemann.__init__ 9 0 0 100%
biobb_flexserv/pcasuite/pcz_lindemann.py PCZlindemann.launch 23 2 0 91%
biobb_flexserv/pcasuite/pcz_lindemann.py pcz_lindemann 2 1 0 50%
biobb_flexserv/pcasuite/pcz_lindemann.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_lindemann.py (no function) 17 1 0 94%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.__init__ 9 0 0 100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.are_compatible 7 4 0 43%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_similarity_index 39 39 0 0%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.eigenmsip 30 1 0 97%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.dot_product 4 1 0 75%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.dot_product_accum 4 0 0 100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_subspace_overlap 4 4 0 0%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_rmsip 9 0 0 100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_rwsip 11 0 0 100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.launch 87 1 0 99%
biobb_flexserv/pcasuite/pcz_similarity.py pcz_similarity 2 1 0 50%
biobb_flexserv/pcasuite/pcz_similarity.py main 10 10 0 0%
biobb_flexserv/pcasuite/pcz_similarity.py (no function) 27 1 0 96%
biobb_flexserv/pcasuite/pcz_stiffness.py PCZstiffness.__init__ 10 0 0 100%
biobb_flexserv/pcasuite/pcz_stiffness.py PCZstiffness.launch 36 1 0 97%
biobb_flexserv/pcasuite/pcz_stiffness.py pcz_stiffness 2 1 0 50%
biobb_flexserv/pcasuite/pcz_stiffness.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_stiffness.py (no function) 18 1 0 94%
biobb_flexserv/pcasuite/pcz_unzip.py PCZunzip.__init__ 10 0 0 100%
biobb_flexserv/pcasuite/pcz_unzip.py PCZunzip.launch 16 3 0 81%
biobb_flexserv/pcasuite/pcz_unzip.py pcz_unzip 2 1 0 50%
biobb_flexserv/pcasuite/pcz_unzip.py main 9 9 0 0%
biobb_flexserv/pcasuite/pcz_unzip.py (no function) 16 1 0 94%
biobb_flexserv/pcasuite/pcz_zip.py PCZzip.__init__ 12 0 0 100%
biobb_flexserv/pcasuite/pcz_zip.py PCZzip.launch 23 5 0 78%
biobb_flexserv/pcasuite/pcz_zip.py pcz_zip 2 1 0 50%
biobb_flexserv/pcasuite/pcz_zip.py main 10 10 0 0%
biobb_flexserv/pcasuite/pcz_zip.py (no function) 16 1 0 94%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py TestBDRun.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py TestBDRun.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py TestBDRun.test_bd_run 5 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py TestDMDRun.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py TestDMDRun.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py TestDMDRun.test_dmd_run 3 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py TestNMARun.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py TestNMARun.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py TestNMARun.test_nma_run 3 0 0 100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py TestPCZunzip.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py TestPCZunzip.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py TestPCZunzip.test_pczunzip 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py TestPCZzip.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py TestPCZzip.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py TestPCZzip.test_pczzip 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py TestPCZanimate.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py TestPCZanimate.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py TestPCZanimate.test_pcz_animate 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py TestPCZbfactor.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py TestPCZbfactor.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py TestPCZbfactor.test_pcz_bfactor 5 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py TestPCZcollectivity.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py TestPCZcollectivity.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py TestPCZcollectivity.test_pcz_collectivity 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py TestPCZevecs.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py TestPCZevecs.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py TestPCZevecs.test_pcz_evecs 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py TestPCZhinges.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py TestPCZhinges.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py TestPCZhinges.test_pcz_hinges 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py TestPCZinfo.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py TestPCZinfo.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py TestPCZinfo.test_pcz_info 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py TestPCZlindemann.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py TestPCZlindemann.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py TestPCZlindemann.test_pcz_lindemann 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py TestPCZsimilarity.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py TestPCZsimilarity.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py TestPCZsimilarity.test_pcz_similarity 3 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py (no function) 6 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py TestPCZstiffness.setup_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py TestPCZstiffness.teardown_class 1 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py TestPCZstiffness.test_pcz_stiffness 2 0 0 100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py (no function) 6 0 0 100%
Total   1296 287 0 78%

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