Coverage report: 87%

Files Functions Classes

coverage.py v7.14.1, created at 2026-05-28 11:28 +0000

File function   statements missing excluded   coverage
biobb_flexserv/__init__.py (no function)   5 0 0   100%
biobb_flexserv/flexserv/__init__.py (no function)   5 0 0   100%
biobb_flexserv/flexserv/bd_run.py BDRun.__init__   11 0 0   100%
biobb_flexserv/flexserv/bd_run.py BDRun.launch   12 2 0   83%
biobb_flexserv/flexserv/bd_run.py bd_run   1 0 0   100%
biobb_flexserv/flexserv/bd_run.py (no function)   13 1 0   92%
biobb_flexserv/flexserv/dmd_run.py DMDRun.__init__   11 0 0   100%
biobb_flexserv/flexserv/dmd_run.py DMDRun.launch   26 2 0   92%
biobb_flexserv/flexserv/dmd_run.py dmd_run   1 0 0   100%
biobb_flexserv/flexserv/dmd_run.py (no function)   13 1 0   92%
biobb_flexserv/flexserv/nma_run.py NMARun.__init__   10 0 0   100%
biobb_flexserv/flexserv/nma_run.py NMARun.launch   21 3 0   86%
biobb_flexserv/flexserv/nma_run.py nma_run   1 0 0   100%
biobb_flexserv/flexserv/nma_run.py (no function)   14 1 0   93%
biobb_flexserv/pcasuite/__init__.py (no function)   13 0 0   100%
biobb_flexserv/pcasuite/pcz_animate.py PCZanimate.__init__   10 0 0   100%
biobb_flexserv/pcasuite/pcz_animate.py PCZanimate.launch   14 2 0   86%
biobb_flexserv/pcasuite/pcz_animate.py pcz_animate   1 0 0   100%
biobb_flexserv/pcasuite/pcz_animate.py (no function)   13 1 0   92%
biobb_flexserv/pcasuite/pcz_bfactor.py PCZbfactor.__init__   10 0 0   100%
biobb_flexserv/pcasuite/pcz_bfactor.py PCZbfactor.launch   15 2 0   87%
biobb_flexserv/pcasuite/pcz_bfactor.py pcz_bfactor   1 0 0   100%
biobb_flexserv/pcasuite/pcz_bfactor.py (no function)   13 1 0   92%
biobb_flexserv/pcasuite/pcz_collectivity.py PCZcollectivity.__init__   9 0 0   100%
biobb_flexserv/pcasuite/pcz_collectivity.py PCZcollectivity.launch   24 2 0   92%
biobb_flexserv/pcasuite/pcz_collectivity.py pcz_collectivity   1 0 0   100%
biobb_flexserv/pcasuite/pcz_collectivity.py (no function)   14 1 0   93%
biobb_flexserv/pcasuite/pcz_evecs.py PCZevecs.__init__   9 0 0   100%
biobb_flexserv/pcasuite/pcz_evecs.py PCZevecs.launch   38 2 0   95%
biobb_flexserv/pcasuite/pcz_evecs.py pcz_evecs   1 0 0   100%
biobb_flexserv/pcasuite/pcz_evecs.py (no function)   15 1 0   93%
biobb_flexserv/pcasuite/pcz_hinges.py PCZhinges.__init__   10 0 0   100%
biobb_flexserv/pcasuite/pcz_hinges.py PCZhinges.parse_output   72 46 0   36%
biobb_flexserv/pcasuite/pcz_hinges.py PCZhinges.launch   20 2 0   90%
biobb_flexserv/pcasuite/pcz_hinges.py pcz_hinges   1 0 0   100%
biobb_flexserv/pcasuite/pcz_hinges.py (no function)   16 1 0   94%
biobb_flexserv/pcasuite/pcz_info.py PCZinfo.__init__   8 0 0   100%
biobb_flexserv/pcasuite/pcz_info.py PCZinfo.launch   40 2 0   95%
biobb_flexserv/pcasuite/pcz_info.py pcz_info   1 0 0   100%
biobb_flexserv/pcasuite/pcz_info.py (no function)   14 1 0   93%
biobb_flexserv/pcasuite/pcz_lindemann.py PCZlindemann.__init__   9 0 0   100%
biobb_flexserv/pcasuite/pcz_lindemann.py PCZlindemann.launch   25 3 0   88%
biobb_flexserv/pcasuite/pcz_lindemann.py pcz_lindemann   1 0 0   100%
biobb_flexserv/pcasuite/pcz_lindemann.py (no function)   14 1 0   93%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.__init__   9 0 0   100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.are_compatible   7 4 0   43%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_similarity_index   39 39 0   0%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.eigenmsip   30 1 0   97%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.dot_product   4 1 0   75%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.dot_product_accum   4 0 0   100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_subspace_overlap   4 4 0   0%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_rmsip   9 0 0   100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.get_rwsip   11 0 0   100%
biobb_flexserv/pcasuite/pcz_similarity.py PCZsimilarity.launch   86 2 0   98%
biobb_flexserv/pcasuite/pcz_similarity.py pcz_similarity   1 0 0   100%
biobb_flexserv/pcasuite/pcz_similarity.py (no function)   24 1 0   96%
biobb_flexserv/pcasuite/pcz_stiffness.py PCZstiffness.__init__   10 0 0   100%
biobb_flexserv/pcasuite/pcz_stiffness.py PCZstiffness.launch   38 2 0   95%
biobb_flexserv/pcasuite/pcz_stiffness.py pcz_stiffness   1 0 0   100%
biobb_flexserv/pcasuite/pcz_stiffness.py (no function)   15 1 0   93%
biobb_flexserv/pcasuite/pcz_unzip.py PCZunzip.__init__   10 0 0   100%
biobb_flexserv/pcasuite/pcz_unzip.py PCZunzip.launch   16 4 0   75%
biobb_flexserv/pcasuite/pcz_unzip.py pcz_unzip   1 0 0   100%
biobb_flexserv/pcasuite/pcz_unzip.py (no function)   13 1 0   92%
biobb_flexserv/pcasuite/pcz_zip.py PCZzip.__init__   12 0 0   100%
biobb_flexserv/pcasuite/pcz_zip.py PCZzip.launch   22 6 0   73%
biobb_flexserv/pcasuite/pcz_zip.py pcz_zip   1 0 0   100%
biobb_flexserv/pcasuite/pcz_zip.py (no function)   13 1 0   92%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py TestBDRun.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py TestBDRun.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py TestBDRun.test_bd_run   5 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_bd_run.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py TestDMDRun.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py TestDMDRun.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py TestDMDRun.test_dmd_run   3 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_dmd_run.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py TestNMARun.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py TestNMARun.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py TestNMARun.test_nma_run   3 0 0   100%
biobb_flexserv/test/unitests/test_flexserv/test_nma_run.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py TestPCZunzip.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py TestPCZunzip.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py TestPCZunzip.test_pczunzip   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcaunzip.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py TestPCZzip.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py TestPCZzip.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py TestPCZzip.test_pczzip   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcazip.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py TestPCZanimate.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py TestPCZanimate.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py TestPCZanimate.test_pcz_animate   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_animate.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py TestPCZbfactor.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py TestPCZbfactor.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py TestPCZbfactor.test_pcz_bfactor   5 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_bfactor.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py TestPCZcollectivity.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py TestPCZcollectivity.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py TestPCZcollectivity.test_pcz_collectivity   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_collectivity.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py TestPCZevecs.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py TestPCZevecs.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py TestPCZevecs.test_pcz_evecs   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_evecs.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py TestPCZhinges.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py TestPCZhinges.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py TestPCZhinges.test_pcz_hinges   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_hinges.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py TestPCZinfo.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py TestPCZinfo.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py TestPCZinfo.test_pcz_info   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_info.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py TestPCZlindemann.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py TestPCZlindemann.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py TestPCZlindemann.test_pcz_lindemann   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_lindemann.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py TestPCZsimilarity.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py TestPCZsimilarity.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py TestPCZsimilarity.test_pcz_similarity   3 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_similarity.py (no function)   6 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py TestPCZstiffness.setup_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py TestPCZstiffness.teardown_class   1 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py TestPCZstiffness.test_pcz_stiffness   2 0 0   100%
biobb_flexserv/test/unitests/test_pcasuite/test_pcz_stiffness.py (no function)   6 0 0   100%
Total     1113 145 0   87%

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