Coverage report: 71%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-22 11:45 +0000

File function   statements missing excluded   coverage
biobb_godmd / __init__.py (no function)   4 0 0   100%
biobb_godmd / godmd / __init__.py (no function)   4 0 0   100%
biobb_godmd / godmd / common.py check_input_path   11 6 0   45%
biobb_godmd / godmd / common.py check_output_path   10 5 0   50%
biobb_godmd / godmd / common.py is_valid_file   2 0 0   100%
biobb_godmd / godmd / common.py (no function)   5 0 0   100%
biobb_godmd / godmd / godmd_prep.py GOdMDPrep.__init__   12 0 0   100%
biobb_godmd / godmd / godmd_prep.py GOdMDPrep.check_data_params   4 0 0   100%
biobb_godmd / godmd / godmd_prep.py GOdMDPrep.extract_sequence   24 3 0   88%
biobb_godmd / godmd / godmd_prep.py GOdMDPrep.retrieve_alignment   51 3 0   94%
biobb_godmd / godmd / godmd_prep.py GOdMDPrep.launch   40 3 0   92%
biobb_godmd / godmd / godmd_prep.py godmd_prep   1 0 0   100%
biobb_godmd / godmd / godmd_prep.py (no function)   18 1 0   94%
biobb_godmd / godmd / godmd_run.py GOdMDRun.__init__   8 8 0   0%
biobb_godmd / godmd / godmd_run.py GOdMDRun.check_data_params   9 9 0   0%
biobb_godmd / godmd / godmd_run.py GOdMDRun.create_godmdin   26 26 0   0%
biobb_godmd / godmd / godmd_run.py GOdMDRun.launch   12 12 0   0%
biobb_godmd / godmd / godmd_run.py godmd_run   1 1 0   0%
biobb_godmd / godmd / godmd_run.py (no function)   17 1 0   94%
biobb_godmd / test / unitests / test_godmd / test_godmd_prep.py TestGOdMDPrep.setup_class   1 0 0   100%
biobb_godmd / test / unitests / test_godmd / test_godmd_prep.py TestGOdMDPrep.teardown_class   1 0 0   100%
biobb_godmd / test / unitests / test_godmd / test_godmd_prep.py TestGOdMDPrep.test_godmd_prep   3 0 0   100%
biobb_godmd / test / unitests / test_godmd / test_godmd_prep.py (no function)   6 0 0   100%
Total     270 78 0   71%

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