Coverage report: 64%

Files Functions Classes

coverage.py v7.9.1, created at 2025-06-25 07:50 +0000

File function statements missing excluded coverage
biobb_godmd/__init__.py (no function) 4 0 0 100%
biobb_godmd/godmd/__init__.py (no function) 4 0 0 100%
biobb_godmd/godmd/common.py check_input_path 11 6 0 45%
biobb_godmd/godmd/common.py check_output_path 10 5 0 50%
biobb_godmd/godmd/common.py is_valid_file 2 0 0 100%
biobb_godmd/godmd/common.py (no function) 5 0 0 100%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.__init__ 12 0 0 100%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.check_data_params 4 0 0 100%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.extract_sequence 24 3 0 88%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.retrieve_alignment 51 3 0 94%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.launch 40 3 0 92%
biobb_godmd/godmd/godmd_prep.py godmd_prep 2 1 0 50%
biobb_godmd/godmd/godmd_prep.py main 11 11 0 0%
biobb_godmd/godmd/godmd_prep.py (no function) 19 1 0 95%
biobb_godmd/godmd/godmd_run.py GOdMDRun.__init__ 8 8 0 0%
biobb_godmd/godmd/godmd_run.py GOdMDRun.check_data_params 9 9 0 0%
biobb_godmd/godmd/godmd_run.py GOdMDRun.create_godmdin 26 26 0 0%
biobb_godmd/godmd/godmd_run.py GOdMDRun.launch 12 12 0 0%
biobb_godmd/godmd/godmd_run.py godmd_run 2 2 0 0%
biobb_godmd/godmd/godmd_run.py main 16 16 0 0%
biobb_godmd/godmd/godmd_run.py (no function) 18 1 0 94%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py TestGOdMDPrep.setup_class 1 0 0 100%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py TestGOdMDPrep.teardown_class 1 0 0 100%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py TestGOdMDPrep.test_godmd_prep 3 0 0 100%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py (no function) 6 0 0 100%
Total   301 107 0 64%

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