Coverage report: 88%

Files Functions Classes

coverage.py v7.14.1, created at 2026-05-28 10:14 +0000

File function   statements missing excluded   coverage
biobb_godmd/__init__.py (no function)   4 0 0   100%
biobb_godmd/godmd/__init__.py (no function)   4 0 0   100%
biobb_godmd/godmd/common.py check_input_path   11 6 0   45%
biobb_godmd/godmd/common.py check_output_path   10 5 0   50%
biobb_godmd/godmd/common.py is_valid_file   2 0 0   100%
biobb_godmd/godmd/common.py (no function)   5 0 0   100%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.__init__   12 0 0   100%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.check_data_params   4 0 0   100%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.extract_sequence   24 3 0   88%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.retrieve_alignment   51 3 0   94%
biobb_godmd/godmd/godmd_prep.py GOdMDPrep.launch   40 3 0   92%
biobb_godmd/godmd/godmd_prep.py godmd_prep   1 0 0   100%
biobb_godmd/godmd/godmd_prep.py (no function)   18 1 0   94%
biobb_godmd/godmd/godmd_run.py GOdMDRun.__init__   8 0 0   100%
biobb_godmd/godmd/godmd_run.py GOdMDRun.check_data_params   9 0 0   100%
biobb_godmd/godmd/godmd_run.py GOdMDRun.create_godmdin   26 10 0   62%
biobb_godmd/godmd/godmd_run.py GOdMDRun.launch   17 2 0   88%
biobb_godmd/godmd/godmd_run.py godmd_run   1 0 0   100%
biobb_godmd/godmd/godmd_run.py (no function)   17 1 0   94%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py TestGOdMDPrep.setup_class   1 0 0   100%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py TestGOdMDPrep.teardown_class   1 0 0   100%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py TestGOdMDPrep.test_godmd_prep   3 0 0   100%
biobb_godmd/test/unitests/test_godmd/test_godmd_prep.py (no function)   6 0 0   100%
biobb_godmd/test/unitests/test_godmd/test_godmd_run.py TestGOdMDrun.setup_class   1 0 0   100%
biobb_godmd/test/unitests/test_godmd/test_godmd_run.py TestGOdMDrun.teardown_class   1 0 0   100%
biobb_godmd/test/unitests/test_godmd/test_godmd_run.py TestGOdMDrun.test_godmd_run   5 0 0   100%
biobb_godmd/test/unitests/test_godmd/test_godmd_run.py (no function)   6 0 0   100%
Total     288 34 0   88%

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