| biobb_io/__init__.py |
(no function) |
4 |
0 |
0 |
100% |
| biobb_io/api/__init__.py |
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3 |
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0 |
100% |
| biobb_io/api/alphafold.py |
AlphaFold.__init__ |
8 |
0 |
0 |
100% |
| biobb_io/api/alphafold.py |
AlphaFold.check_data_params |
1 |
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| biobb_io/api/alphafold.py |
AlphaFold.launch |
10 |
1 |
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alphafold |
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0 |
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main |
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15 |
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ApiBindingSite.__init__ |
8 |
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| biobb_io/api/api_binding_site.py |
ApiBindingSite.check_data_params |
1 |
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ApiBindingSite.launch |
11 |
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api_binding_site |
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17 |
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94% |
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CanonicalFasta.__init__ |
9 |
0 |
0 |
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| biobb_io/api/canonical_fasta.py |
CanonicalFasta.check_data_params |
1 |
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| biobb_io/api/canonical_fasta.py |
CanonicalFasta.launch |
9 |
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canonical_fasta |
1 |
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100% |
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main |
8 |
8 |
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(no function) |
15 |
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93% |
| biobb_io/api/common.py |
check_output_path |
10 |
5 |
0 |
50% |
| biobb_io/api/common.py |
is_valid_file |
2 |
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| biobb_io/api/common.py |
download_pdb |
8 |
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0 |
88% |
| biobb_io/api/common.py |
download_af |
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2 |
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71% |
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download_mmcif |
8 |
2 |
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75% |
| biobb_io/api/common.py |
download_ligand |
9 |
2 |
0 |
78% |
| biobb_io/api/common.py |
download_fasta |
8 |
2 |
0 |
75% |
| biobb_io/api/common.py |
download_binding_site |
6 |
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0 |
100% |
| biobb_io/api/common.py |
download_ideal_sdf |
8 |
2 |
0 |
75% |
| biobb_io/api/common.py |
download_str_info |
6 |
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| biobb_io/api/common.py |
write_pdb |
8 |
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0 |
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| biobb_io/api/common.py |
write_mmcif |
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0 |
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| biobb_io/api/common.py |
write_fasta |
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| biobb_io/api/common.py |
write_sdf |
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get_cluster_pdb_codes |
11 |
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91% |
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get_uniprot |
7 |
1 |
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86% |
| biobb_io/api/common.py |
get_variants |
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| biobb_io/api/common.py |
write_json |
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get_memprotmd_sim_list |
6 |
6 |
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get_memprotmd_sim_search |
11 |
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0 |
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get_memprotmd_sim |
5 |
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0 |
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| biobb_io/api/common.py |
check_mandatory_property |
4 |
2 |
0 |
50% |
| biobb_io/api/common.py |
check_uniprot_code |
5 |
2 |
0 |
60% |
| biobb_io/api/common.py |
(no function) |
30 |
0 |
0 |
100% |
| biobb_io/api/ideal_sdf.py |
IdealSdf.__init__ |
9 |
0 |
0 |
100% |
| biobb_io/api/ideal_sdf.py |
IdealSdf.check_data_params |
1 |
0 |
0 |
100% |
| biobb_io/api/ideal_sdf.py |
IdealSdf.launch |
9 |
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89% |
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ideal_sdf |
1 |
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0 |
100% |
| biobb_io/api/ideal_sdf.py |
main |
8 |
8 |
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| biobb_io/api/ideal_sdf.py |
(no function) |
15 |
1 |
0 |
93% |
| biobb_io/api/ligand.py |
Ligand.__init__ |
9 |
0 |
0 |
100% |
| biobb_io/api/ligand.py |
Ligand.check_data_params |
1 |
0 |
0 |
100% |
| biobb_io/api/ligand.py |
Ligand.launch |
9 |
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0 |
89% |
| biobb_io/api/ligand.py |
ligand |
1 |
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0 |
100% |
| biobb_io/api/ligand.py |
main |
8 |
8 |
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0% |
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(no function) |
15 |
1 |
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93% |
| biobb_io/api/memprotmd_sim.py |
MemProtMDSim.__init__ |
8 |
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0 |
100% |
| biobb_io/api/memprotmd_sim.py |
MemProtMDSim.check_data_params |
1 |
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MemProtMDSim.launch |
7 |
1 |
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86% |
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memprotmd_sim |
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main |
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(no function) |
15 |
1 |
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93% |
| biobb_io/api/memprotmd_sim_list.py |
MemProtMDSimList.__init__ |
7 |
7 |
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0% |
| biobb_io/api/memprotmd_sim_list.py |
MemProtMDSimList.check_data_params |
1 |
1 |
0 |
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| biobb_io/api/memprotmd_sim_list.py |
MemProtMDSimList.launch |
7 |
7 |
0 |
0% |
| biobb_io/api/memprotmd_sim_list.py |
memprotmd_sim_list |
1 |
1 |
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| biobb_io/api/memprotmd_sim_list.py |
main |
8 |
8 |
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(no function) |
15 |
1 |
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| biobb_io/api/memprotmd_sim_search.py |
MemProtMDSimSearch.__init__ |
9 |
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MemProtMDSimSearch.check_data_params |
1 |
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0 |
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| biobb_io/api/memprotmd_sim_search.py |
MemProtMDSimSearch.launch |
8 |
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88% |
| biobb_io/api/memprotmd_sim_search.py |
memprotmd_sim_search |
1 |
1 |
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| biobb_io/api/memprotmd_sim_search.py |
main |
8 |
8 |
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(no function) |
15 |
1 |
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93% |
| biobb_io/api/mmcif.py |
Mmcif.__init__ |
9 |
0 |
0 |
100% |
| biobb_io/api/mmcif.py |
Mmcif.check_data_params |
1 |
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0 |
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| biobb_io/api/mmcif.py |
Mmcif.launch |
9 |
1 |
0 |
89% |
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mmcif |
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main |
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(no function) |
15 |
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93% |
| biobb_io/api/pdb.py |
Pdb.__init__ |
10 |
0 |
0 |
100% |
| biobb_io/api/pdb.py |
Pdb.check_data_params |
1 |
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| biobb_io/api/pdb.py |
Pdb.launch |
9 |
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pdb |
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| biobb_io/api/pdb.py |
main |
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(no function) |
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| biobb_io/api/pdb_cluster_zip.py |
PdbClusterZip.__init__ |
11 |
0 |
0 |
100% |
| biobb_io/api/pdb_cluster_zip.py |
PdbClusterZip.check_data_params |
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0 |
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| biobb_io/api/pdb_cluster_zip.py |
PdbClusterZip.launch |
19 |
1 |
0 |
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| biobb_io/api/pdb_cluster_zip.py |
pdb_cluster_zip |
1 |
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| biobb_io/api/pdb_cluster_zip.py |
main |
8 |
8 |
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(no function) |
17 |
1 |
0 |
94% |
| biobb_io/api/pdb_variants.py |
PdbVariants.__init__ |
8 |
0 |
0 |
100% |
| biobb_io/api/pdb_variants.py |
PdbVariants.check_data_params |
1 |
0 |
0 |
100% |
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PdbVariants.launch |
36 |
5 |
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86% |
| biobb_io/api/pdb_variants.py |
pdb_variants |
1 |
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0 |
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| biobb_io/api/pdb_variants.py |
main |
8 |
8 |
0 |
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| biobb_io/api/pdb_variants.py |
(no function) |
18 |
1 |
0 |
94% |
| biobb_io/api/structure_info.py |
StructureInfo.__init__ |
8 |
0 |
0 |
100% |
| biobb_io/api/structure_info.py |
StructureInfo.check_data_params |
1 |
0 |
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100% |
| biobb_io/api/structure_info.py |
StructureInfo.launch |
10 |
1 |
0 |
90% |
| biobb_io/api/structure_info.py |
structure_info |
1 |
0 |
0 |
100% |
| biobb_io/api/structure_info.py |
main |
8 |
8 |
0 |
0% |
| biobb_io/api/structure_info.py |
(no function) |
15 |
1 |
0 |
93% |
| biobb_io/test/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_alphafold.py |
TestAlphaFold.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_alphafold.py |
TestAlphaFold.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_alphafold.py |
TestAlphaFold.test_alphafold |
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0 |
0 |
100% |
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(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_api_binding_site.py |
TestApiBindingSite.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_api_binding_site.py |
TestApiBindingSite.teardown_class |
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0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_api_binding_site.py |
TestApiBindingSite.test_api_binding_site |
3 |
0 |
0 |
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| biobb_io/test/unitests/test_mmb_api/test_api_binding_site.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_canonical_fasta.py |
TestCanonicalFasta.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_canonical_fasta.py |
TestCanonicalFasta.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_canonical_fasta.py |
TestCanonicalFasta.test_canonical_fasta |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_canonical_fasta.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ideal_sdf.py |
TestIdealSdf.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ideal_sdf.py |
TestIdealSdf.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ideal_sdf.py |
TestIdealSdf.test_ideal_sdf |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ideal_sdf.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ligand.py |
TestLigand.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ligand.py |
TestLigand.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ligand.py |
TestLigand.test_ligand |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_ligand.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim.py |
TestMemProtMDSim.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim.py |
TestMemProtMDSim.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim.py |
TestMemProtMDSim.test_memprotmd_sim |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim_search.py |
TestMemProtMDSimSearch.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim_search.py |
TestMemProtMDSimSearch.teardown_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim_search.py |
TestMemProtMDSimSearch.test_memprotmd_sim_search |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_memprotmd_sim_search.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_mmcif.py |
TestMmcif.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_mmcif.py |
TestMmcif.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_mmcif.py |
TestMmcif.test_mmcif |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_mmcif.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb.py |
TestPdb.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb.py |
TestPdb.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb.py |
TestPdb.test_pdb |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_cluster_zip.py |
TestPdbClusterZip.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_cluster_zip.py |
TestPdbClusterZip.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_cluster_zip.py |
TestPdbClusterZip.test_pdb_cluster_zip |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_cluster_zip.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_variants.py |
TestMmbPdbVariants.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_variants.py |
TestMmbPdbVariants.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_variants.py |
TestMmbPdbVariants.test_get_pdb_zip |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_pdb_variants.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_structure_info.py |
TestStructureInfo.setup_class |
1 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_structure_info.py |
TestStructureInfo.teardown_class |
2 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_structure_info.py |
TestStructureInfo.test_structure_info |
3 |
0 |
0 |
100% |
| biobb_io/test/unitests/test_mmb_api/test_structure_info.py |
(no function) |
6 |
0 |
0 |
100% |