Coverage report: 59%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-22 13:18 +0000

File   statements missing excluded   coverage
biobb_common / biobb_common / __init__.py   11 1 0   91%
biobb_common / biobb_common / command_wrapper / __init__.py   0 0 0   100%
biobb_common / biobb_common / command_wrapper / cmd_wrapper.py   57 19 0   67%
biobb_common / biobb_common / configuration / __init__.py   0 0 0   100%
biobb_common / biobb_common / configuration / settings.py   93 21 0   77%
biobb_common / biobb_common / generic / __init__.py   2 0 0   100%
biobb_common / biobb_common / generic / biobb_object.py   268 136 0   49%
biobb_common / biobb_common / tools / __init__.py   3 0 0   100%
biobb_common / biobb_common / tools / file_utils.py   410 233 0   43%
biobb_common / biobb_common / tools / test_fixtures.py   277 182 0   34%
biobb_model / __init__.py   4 0 0   100%
biobb_model / model / __init__.py   15 0 0   100%
biobb_model / model / checking_log.py   33 4 0   88%
biobb_model / model / common.py   22 14 0   36%
biobb_model / model / fix_altlocs.py   38 5 0   87%
biobb_model / model / fix_amides.py   33 4 0   88%
biobb_model / model / fix_backbone.py   42 30 0   29%
biobb_model / model / fix_chirality.py   33 4 0   88%
biobb_model / model / fix_pdb.py   48 6 0   88%
biobb_model / model / fix_pdb_utils.py   530 189 0   64%
biobb_model / model / fix_side_chain.py   40 7 0   82%
biobb_model / model / fix_ssbonds.py   33 4 0   88%
biobb_model / model / mutate.py   44 7 0   84%
biobb_model / test / __init__.py   0 0 0   100%
biobb_model / test / unitests / test_model / test_checking_log.py   10 0 0   100%
biobb_model / test / unitests / test_model / test_fix_altlocs.py   11 0 0   100%
biobb_model / test / unitests / test_model / test_fix_amides.py   11 0 0   100%
biobb_model / test / unitests / test_model / test_fix_chirality.py   11 0 0   100%
biobb_model / test / unitests / test_model / test_fix_pdb.py   11 0 0   100%
biobb_model / test / unitests / test_model / test_fix_side_chain.py   11 0 0   100%
biobb_model / test / unitests / test_model / test_fix_ssbonds.py   11 0 0   100%
biobb_model / test / unitests / test_model / test_mutate.py   11 0 0   100%
setup.py   4 4 0   0%
Total   2127 870 0   59%

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