Coverage report: 59%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-22 13:18 +0000

File class   statements missing excluded   coverage
biobb_common / biobb_common / __init__.py BioBBGlobalProperties   3 1 0   67%
biobb_common / biobb_common / __init__.py (no class)   8 0 0   100%
biobb_common / biobb_common / command_wrapper / __init__.py (no class)   0 0 0   100%
biobb_common / biobb_common / command_wrapper / cmd_wrapper.py CmdWrapper   47 19 0   60%
biobb_common / biobb_common / command_wrapper / cmd_wrapper.py (no class)   10 0 0   100%
biobb_common / biobb_common / configuration / __init__.py (no class)   0 0 0   100%
biobb_common / biobb_common / configuration / settings.py ConfReader   71 18 0   75%
biobb_common / biobb_common / configuration / settings.py (no class)   22 3 0   86%
biobb_common / biobb_common / generic / __init__.py (no class)   2 0 0   100%
biobb_common / biobb_common / generic / biobb_object.py BiobbObject   237 136 0   43%
biobb_common / biobb_common / generic / biobb_object.py (no class)   31 0 0   100%
biobb_common / biobb_common / tools / __init__.py (no class)   3 0 0   100%
biobb_common / biobb_common / tools / file_utils.py (no class)   410 233 0   43%
biobb_common / biobb_common / tools / test_fixtures.py (no class)   277 182 0   34%
biobb_model / __init__.py (no class)   4 0 0   100%
biobb_model / model / __init__.py (no class)   15 0 0   100%
biobb_model / model / checking_log.py CheckingLog   20 3 0   85%
biobb_model / model / checking_log.py (no class)   13 1 0   92%
biobb_model / model / common.py (no class)   22 14 0   36%
biobb_model / model / fix_altlocs.py FixAltLocs   24 4 0   83%
biobb_model / model / fix_altlocs.py (no class)   14 1 0   93%
biobb_model / model / fix_amides.py FixAmides   20 3 0   85%
biobb_model / model / fix_amides.py (no class)   13 1 0   92%
biobb_model / model / fix_backbone.py FixBackbone   28 28 0   0%
biobb_model / model / fix_backbone.py (no class)   14 2 0   86%
biobb_model / model / fix_chirality.py FixChirality   20 3 0   85%
biobb_model / model / fix_chirality.py (no class)   13 1 0   92%
biobb_model / model / fix_pdb.py FixPdb   34 5 0   85%
biobb_model / model / fix_pdb.py (no class)   14 1 0   93%
biobb_model / model / fix_pdb_utils.py Atom   27 15 0   44%
biobb_model / model / fix_pdb_utils.py Residue   67 56 0   16%
biobb_model / model / fix_pdb_utils.py Chain   44 31 0   30%
biobb_model / model / fix_pdb_utils.py Structure   122 33 0   73%
biobb_model / model / fix_pdb_utils.py (no class)   270 54 0   80%
biobb_model / model / fix_side_chain.py FixSideChain   25 6 0   76%
biobb_model / model / fix_side_chain.py (no class)   15 1 0   93%
biobb_model / model / fix_ssbonds.py FixSSBonds   20 3 0   85%
biobb_model / model / fix_ssbonds.py (no class)   13 1 0   92%
biobb_model / model / mutate.py Mutate   29 6 0   79%
biobb_model / model / mutate.py (no class)   15 1 0   93%
biobb_model / test / __init__.py (no class)   0 0 0   100%
biobb_model / test / unitests / test_model / test_checking_log.py TestCheckingLog   4 0 0   100%
biobb_model / test / unitests / test_model / test_checking_log.py (no class)   6 0 0   100%
biobb_model / test / unitests / test_model / test_fix_altlocs.py TestFixAltlocs   5 0 0   100%
biobb_model / test / unitests / test_model / test_fix_altlocs.py (no class)   6 0 0   100%
biobb_model / test / unitests / test_model / test_fix_amides.py TestFixAmides   5 0 0   100%
biobb_model / test / unitests / test_model / test_fix_amides.py (no class)   6 0 0   100%
biobb_model / test / unitests / test_model / test_fix_chirality.py TestFixChirality   5 0 0   100%
biobb_model / test / unitests / test_model / test_fix_chirality.py (no class)   6 0 0   100%
biobb_model / test / unitests / test_model / test_fix_pdb.py TestFixPdb   5 0 0   100%
biobb_model / test / unitests / test_model / test_fix_pdb.py (no class)   6 0 0   100%
biobb_model / test / unitests / test_model / test_fix_side_chain.py TestFixSideChain   5 0 0   100%
biobb_model / test / unitests / test_model / test_fix_side_chain.py (no class)   6 0 0   100%
biobb_model / test / unitests / test_model / test_fix_ssbonds.py TestFixSSBonds   5 0 0   100%
biobb_model / test / unitests / test_model / test_fix_ssbonds.py (no class)   6 0 0   100%
biobb_model / test / unitests / test_model / test_mutate.py TestFixSideChain   5 0 0   100%
biobb_model / test / unitests / test_model / test_mutate.py (no class)   6 0 0   100%
setup.py (no class)   4 4 0   0%
Total     2127 870 0   59%

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