Coverage report: 58%

Files Functions Classes

coverage.py v7.6.10, created at 2025-01-28 11:32 +0000

File class statements missing excluded coverage
biobb_common/biobb_common/__init__.py (no class) 2 0 0 100%
biobb_common/biobb_common/command_wrapper/__init__.py (no class) 0 0 0 100%
biobb_common/biobb_common/command_wrapper/cmd_wrapper.py CmdWrapper 49 20 0 59%
biobb_common/biobb_common/command_wrapper/cmd_wrapper.py (no class) 10 0 0 100%
biobb_common/biobb_common/configuration/__init__.py (no class) 0 0 0 100%
biobb_common/biobb_common/configuration/settings.py ConfReader 71 18 0 75%
biobb_common/biobb_common/configuration/settings.py (no class) 22 3 0 86%
biobb_common/biobb_common/generic/__init__.py (no class) 0 0 0 100%
biobb_common/biobb_common/generic/biobb_object.py BiobbObject 195 99 0 49%
biobb_common/biobb_common/generic/biobb_object.py (no class) 23 0 0 100%
biobb_common/biobb_common/tools/__init__.py (no class) 0 0 0 100%
biobb_common/biobb_common/tools/file_utils.py (no class) 383 211 0 45%
biobb_common/biobb_common/tools/test_fixtures.py (no class) 266 164 0 38%
biobb_model/__init__.py (no class) 4 0 0 100%
biobb_model/model/__init__.py (no class) 15 0 0 100%
biobb_model/model/checking_log.py CheckingLog 20 3 0 85%
biobb_model/model/checking_log.py (no class) 24 11 0 54%
biobb_model/model/common.py (no class) 22 14 0 36%
biobb_model/model/fix_altlocs.py FixAltLocs 24 4 0 83%
biobb_model/model/fix_altlocs.py (no class) 25 11 0 56%
biobb_model/model/fix_amides.py FixAmides 20 3 0 85%
biobb_model/model/fix_amides.py (no class) 24 11 0 54%
biobb_model/model/fix_backbone.py FixBackbone 28 28 0 0%
biobb_model/model/fix_backbone.py (no class) 26 13 0 50%
biobb_model/model/fix_chirality.py FixChirality 20 3 0 85%
biobb_model/model/fix_chirality.py (no class) 24 11 0 54%
biobb_model/model/fix_pdb.py FixPdb 34 5 0 85%
biobb_model/model/fix_pdb.py (no class) 25 11 0 56%
biobb_model/model/fix_pdb_utils.py Atom 27 15 0 44%
biobb_model/model/fix_pdb_utils.py Residue 67 56 0 16%
biobb_model/model/fix_pdb_utils.py Chain 44 31 0 30%
biobb_model/model/fix_pdb_utils.py Structure 122 33 0 73%
biobb_model/model/fix_pdb_utils.py (no class) 270 54 0 80%
biobb_model/model/fix_side_chain.py FixSideChain 25 6 0 76%
biobb_model/model/fix_side_chain.py (no class) 26 11 0 58%
biobb_model/model/fix_ssbonds.py FixSSBonds 20 3 0 85%
biobb_model/model/fix_ssbonds.py (no class) 24 11 0 54%
biobb_model/model/mutate.py Mutate 29 6 0 79%
biobb_model/model/mutate.py (no class) 26 11 0 58%
biobb_model/test/__init__.py (no class) 0 0 0 100%
biobb_model/test/unitests/test_model/test_checking_log.py TestCheckingLog 5 0 0 100%
biobb_model/test/unitests/test_model/test_checking_log.py (no class) 6 0 0 100%
biobb_model/test/unitests/test_model/test_fix_altlocs.py TestFixAltlocs 5 0 0 100%
biobb_model/test/unitests/test_model/test_fix_altlocs.py (no class) 6 0 0 100%
biobb_model/test/unitests/test_model/test_fix_amides.py TestFixAmides 5 0 0 100%
biobb_model/test/unitests/test_model/test_fix_amides.py (no class) 6 0 0 100%
biobb_model/test/unitests/test_model/test_fix_chirality.py TestFixChirality 5 0 0 100%
biobb_model/test/unitests/test_model/test_fix_chirality.py (no class) 6 0 0 100%
biobb_model/test/unitests/test_model/test_fix_pdb.py TestFixPdb 5 0 0 100%
biobb_model/test/unitests/test_model/test_fix_pdb.py (no class) 6 0 0 100%
biobb_model/test/unitests/test_model/test_fix_side_chain.py TestFixSideChain 5 0 0 100%
biobb_model/test/unitests/test_model/test_fix_side_chain.py (no class) 6 0 0 100%
biobb_model/test/unitests/test_model/test_fix_ssbonds.py TestFixSSBonds 5 0 0 100%
biobb_model/test/unitests/test_model/test_fix_ssbonds.py (no class) 6 0 0 100%
biobb_model/test/unitests/test_model/test_mutate.py TestFixSideChain 5 0 0 100%
biobb_model/test/unitests/test_model/test_mutate.py (no class) 6 0 0 100%
setup.py (no class) 4 4 0 0%
Total   2128 884 0 58%

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