Coverage report: 81%

Files Functions Classes

coverage.py v7.8.0, created at 2025-05-06 12:37 +0000

File function statements missing excluded coverage
biobb_pdb_tools/__init__.py (no function) 4 0 0 100%
biobb_pdb_tools/pdb_tools/__init__.py (no function) 2 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py Pdbchain.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py Pdbchain.launch 16 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py biobb_pdb_chain 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_chain.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py Chainxseg.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py Chainxseg.launch 12 1 0 92%
biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py biobb_pdb_chainxseg 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_chainxseg.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py Delhetatm.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py Delhetatm.launch 12 1 0 92%
biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py biobb_pdb_delhetatm 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_delhetatm.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py Pdbfetch.__init__ 10 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py Pdbfetch.launch 15 3 0 80%
biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py biobb_pdb_fetch 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py main 8 8 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_fetch.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py Pdbfixinsert.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py Pdbfixinsert.launch 16 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py biobb_pdb_fixinsert 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_fixinsert.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py Pdbkeepcoord.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py Pdbkeepcoord.launch 12 1 0 92%
biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py biobb_pdb_keepcoord 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_keepcoord.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py Pdbmerge.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py Pdbmerge.launch 23 2 0 91%
biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py biobb_pdb_merge 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_merge.py (no function) 18 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py Mkensemble.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py Mkensemble.launch 23 2 0 91%
biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py biobb_pdb_mkensemble 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_mkensemble.py (no function) 18 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py Pdbreres.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py Pdbreres.launch 16 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py biobb_pdb_reres 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_reres.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py Pdbseg.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py Pdbseg.launch 16 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py biobb_pdb_seg 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_seg.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py Pdbselaltloc.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py Pdbselaltloc.launch 16 3 0 81%
biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py biobb_pdb_selaltloc 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_selaltloc.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py Pdbselchain.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py Pdbselchain.launch 16 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py biobb_pdb_selchain 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_selchain.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py Pdbselres.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py Pdbselres.launch 16 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py biobb_pdb_selres 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_selres.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py Pdbsplitmodel.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py Pdbsplitmodel.launch 25 6 0 76%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py biobb_pdb_splitmodel 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitmodel.py (no function) 19 1 0 95%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py Pdbsplitseg.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py Pdbsplitseg.launch 25 6 0 76%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py biobb_pdb_splitseg 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_splitseg.py (no function) 19 1 0 95%
biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py Pdbtidy.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py Pdbtidy.launch 16 3 0 81%
biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py biobb_pdb_tidy 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_tidy.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py Pdbtofasta.__init__ 9 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py Pdbtofasta.launch 16 1 0 94%
biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py biobb_pdb_tofasta 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_tofasta.py (no function) 15 1 0 93%
biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py Pdbuniqname.__init__ 8 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py Pdbuniqname.launch 11 1 0 91%
biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py biobb_pdb_uniqname 1 0 0 100%
biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py main 9 9 0 0%
biobb_pdb_tools/pdb_tools/biobb_pdb_uniqname.py (no function) 15 1 0 93%
biobb_pdb_tools/test/__init__.py (no function) 0 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/__init__.py (no function) 0 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chain.py TestPdbChain.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chain.py TestPdbChain.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chain.py TestPdbChain.test_pdbchain 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chain.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chainxseg.py TestPdbChainxseg.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chainxseg.py TestPdbChainxseg.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chainxseg.py TestPdbChainxseg.test_chainxseg 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_chainxseg.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_delhetatm.py TestPdbdelhetatm.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_delhetatm.py TestPdbdelhetatm.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_delhetatm.py TestPdbdelhetatm.test_delhetatm 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_delhetatm.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fetch.py TestPdbFetch.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fetch.py TestPdbFetch.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fetch.py TestPdbFetch.test_pdbfetch 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fetch.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fixinsert.py TestFixInsert.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fixinsert.py TestFixInsert.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fixinsert.py TestFixInsert.test_pdb_fixinsert 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_fixinsert.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_keepcord.py TestPdbKeepCoord.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_keepcord.py TestPdbKeepCoord.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_keepcord.py TestPdbKeepCoord.test_pdbkeepcoord 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_keepcord.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_merge.py TestPdbMerge.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_merge.py TestPdbMerge.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_merge.py TestPdbMerge.test_pdbmerge 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_merge.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_mkensemble.py TestPdbMkensemble.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_mkensemble.py TestPdbMkensemble.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_mkensemble.py TestPdbMkensemble.test_mkensemble 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_mkensemble.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_reres.py TestPdbreres.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_reres.py TestPdbreres.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_reres.py TestPdbreres.test_pdbreres 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_reres.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_seg.py TestPdbseg.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_seg.py TestPdbseg.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_seg.py TestPdbseg.test_pdbseg 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_seg.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selaltloc.py TestPdbSelAltLoc.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selaltloc.py TestPdbSelAltLoc.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selaltloc.py TestPdbSelAltLoc.test_pdbselaltloc 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selaltloc.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selchain.py TestPdbSelChain.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selchain.py TestPdbSelChain.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selchain.py TestPdbSelChain.test_pdb_selchain 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selchain.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selres.py TestPdbSelres.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selres.py TestPdbSelres.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selres.py TestPdbSelres.test_pdb_selres 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_selres.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitmodel.py TestPdbpdbsplitmodel.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitmodel.py TestPdbpdbsplitmodel.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitmodel.py TestPdbpdbsplitmodel.test_splitmodel 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitmodel.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitseg.py TestPdbpdbsplitseg.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitseg.py TestPdbpdbsplitseg.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitseg.py TestPdbpdbsplitseg.test_splitseg 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_splitseg.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tidy.py TestPdbTidy.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tidy.py TestPdbTidy.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tidy.py TestPdbTidy.test_pdbtidy 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tidy.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tofasta.py TestPdbTidy.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tofasta.py TestPdbTidy.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tofasta.py TestPdbTidy.test_pdbtofasta 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_tofasta.py (no function) 6 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_uniqname.py TestPdbUniqname.setup_class 1 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_uniqname.py TestPdbUniqname.teardown_class 2 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_uniqname.py TestPdbUniqname.test_pdbtofasta 4 0 0 100%
biobb_pdb_tools/test/unitests/test_pdb_tools/test_pdb_uniqname.py (no function) 6 0 0 100%
Total   1160 215 0 81%

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