Coverage report: 74%

Files Functions Classes

coverage.py v7.6.10, created at 2025-01-23 10:10 +0000

File function statements missing excluded coverage
biobb_pmx/__init__.py (no function) 4 0 0 100%
biobb_pmx/pmxbiobb/__init__.py (no function) 3 0 0 100%
biobb_pmx/pmxbiobb/common.py create_mutations_file 18 4 0 78%
biobb_pmx/pmxbiobb/common.py _from_string_to_list 8 8 0 0%
biobb_pmx/pmxbiobb/common.py (no function) 5 0 0 100%
biobb_pmx/pmxbiobb/pmxanalyse.py Pmxanalyse.__init__ 24 0 0 100%
biobb_pmx/pmxbiobb/pmxanalyse.py Pmxanalyse.launch 67 17 0 75%
biobb_pmx/pmxbiobb/pmxanalyse.py pmxanalyse 2 1 0 50%
biobb_pmx/pmxbiobb/pmxanalyse.py main 11 11 0 0%
biobb_pmx/pmxbiobb/pmxanalyse.py (no function) 16 1 0 94%
biobb_pmx/pmxbiobb/pmxatom_mapping.py Pmxatom_mapping.__init__ 24 1 0 96%
biobb_pmx/pmxbiobb/pmxatom_mapping.py Pmxatom_mapping.launch 60 27 0 55%
biobb_pmx/pmxbiobb/pmxatom_mapping.py pmxatom_mapping 2 1 0 50%
biobb_pmx/pmxbiobb/pmxatom_mapping.py main 19 19 0 0%
biobb_pmx/pmxbiobb/pmxatom_mapping.py (no function) 17 1 0 94%
biobb_pmx/pmxbiobb/pmxcreate_top.py Pmxcreate_top.__init__ 17 1 0 94%
biobb_pmx/pmxbiobb/pmxcreate_top.py Pmxcreate_top.launch 40 1 0 98%
biobb_pmx/pmxbiobb/pmxcreate_top.py pmxcreate_top 2 1 0 50%
biobb_pmx/pmxbiobb/pmxcreate_top.py main 10 10 0 0%
biobb_pmx/pmxbiobb/pmxcreate_top.py (no function) 18 1 0 94%
biobb_pmx/pmxbiobb/pmxgentop.py Pmxgentop.__init__ 17 1 0 94%
biobb_pmx/pmxbiobb/pmxgentop.py Pmxgentop.launch 51 14 0 73%
biobb_pmx/pmxbiobb/pmxgentop.py pmxgentop 2 1 0 50%
biobb_pmx/pmxbiobb/pmxgentop.py main 9 9 0 0%
biobb_pmx/pmxbiobb/pmxgentop.py (no function) 18 1 0 94%
biobb_pmx/pmxbiobb/pmxligand_hybrid.py Pmxligand_hybrid.__init__ 20 1 0 95%
biobb_pmx/pmxbiobb/pmxligand_hybrid.py Pmxligand_hybrid.launch 39 14 0 64%
biobb_pmx/pmxbiobb/pmxligand_hybrid.py pmxligand_hybrid 2 1 0 50%
biobb_pmx/pmxbiobb/pmxligand_hybrid.py main 19 19 0 0%
biobb_pmx/pmxbiobb/pmxligand_hybrid.py (no function) 17 1 0 94%
biobb_pmx/pmxbiobb/pmxmerge_ff.py Pmxmerge_ff.__init__ 13 1 0 92%
biobb_pmx/pmxbiobb/pmxmerge_ff.py Pmxmerge_ff.launch 20 1 0 95%
biobb_pmx/pmxbiobb/pmxmerge_ff.py pmxmerge_ff 2 1 0 50%
biobb_pmx/pmxbiobb/pmxmerge_ff.py main 9 9 0 0%
biobb_pmx/pmxbiobb/pmxmerge_ff.py (no function) 19 1 0 95%
biobb_pmx/pmxbiobb/pmxmutate.py Pmxmutate.__init__ 17 1 0 94%
biobb_pmx/pmxbiobb/pmxmutate.py Pmxmutate.launch 27 8 0 70%
biobb_pmx/pmxbiobb/pmxmutate.py pmxmutate 2 1 0 50%
biobb_pmx/pmxbiobb/pmxmutate.py main 10 10 0 0%
biobb_pmx/pmxbiobb/pmxmutate.py (no function) 19 1 0 95%
biobb_pmx/test/__init__.py (no function) 0 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxanalyse.py TestPmxanalyse.setup_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxanalyse.py TestPmxanalyse.teardown_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxanalyse.py TestPmxanalyse.test_pmxanalyse 4 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxanalyse.py (no function) 6 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxatom_mapping.py TestPmxatom_mapping.setup_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxatom_mapping.py TestPmxatom_mapping.teardown_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxatom_mapping.py TestPmxatom_mapping.test_pmxatom_mapping 5 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxatom_mapping.py (no function) 6 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxcreate_top.py TestPmxcreate_top.setup_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxcreate_top.py TestPmxcreate_top.teardown_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxcreate_top.py TestPmxcreate_top.test_pmxcreate_top 3 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxcreate_top.py (no function) 6 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxgentop.py TestPmxgentop.setup_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxgentop.py TestPmxgentop.teardown_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxgentop.py TestPmxgentop.test_pmxgentop 3 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxgentop.py (no function) 6 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxligand_hybrid.py TestPmxligand_hybrid.setup_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxligand_hybrid.py TestPmxligand_hybrid.teardown_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxligand_hybrid.py TestPmxligand_hybrid.test_pmxligand_hybrid 9 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxligand_hybrid.py (no function) 6 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmerge_ff.py TestPmxmerge_ff.setup_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmerge_ff.py TestPmxmerge_ff.teardown_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmerge_ff.py TestPmxmerge_ff.test_pmxmerge_ff 3 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmerge_ff.py (no function) 6 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmutate.py TestPmxmutate.setup_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmutate.py TestPmxmutate.teardown_class 1 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmutate.py TestPmxmutate.test_pmxmutate 3 0 0 100%
biobb_pmx/test/unitests/test_pmx/test_pmxmutate.py (no function) 6 0 0 100%
Total   785 201 0 74%

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