Coverage report: 89%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-16 14:59 +0000

File   statements missing excluded   coverage
biobb_structure_utils / __init__.py   4 0 0   100%
biobb_structure_utils / gro_lib / __init__.py   0 0 0   100%
biobb_structure_utils / gro_lib / gro.py   210 59 0   72%
biobb_structure_utils / test / __init__.py   0 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_cat_pdb.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_closest_residues.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_atoms_gro.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_atoms_pdb.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_chain.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_heteroatom.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_model.py   11 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_molecule.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_residues.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_ligand_gro.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_ligand_pdb.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_molecules.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_pdb_water.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_2vgb.py   14 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_gro.py   14 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_pdb.py   14 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_smallgro.py   14 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_sort_gro_residues.py   12 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_str_check_add_hydrogens.py   11 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_structure_check.py   11 0 0   100%
biobb_structure_utils / utils / __init__.py   3 0 0   100%
biobb_structure_utils / utils / cat_pdb.py   47 2 0   96%
biobb_structure_utils / utils / closest_residues.py   74 8 0   89%
biobb_structure_utils / utils / common.py   144 29 0   80%
biobb_structure_utils / utils / extract_atoms.py   57 5 0   91%
biobb_structure_utils / utils / extract_chain.py   56 9 0   84%
biobb_structure_utils / utils / extract_heteroatoms.py   58 8 0   86%
biobb_structure_utils / utils / extract_model.py   63 8 0   87%
biobb_structure_utils / utils / extract_molecule.py   50 5 0   90%
biobb_structure_utils / utils / extract_residues.py   53 5 0   91%
biobb_structure_utils / utils / remove_ligand.py   44 2 0   95%
biobb_structure_utils / utils / remove_molecules.py   56 5 0   91%
biobb_structure_utils / utils / remove_pdb_water.py   29 2 0   93%
biobb_structure_utils / utils / renumber_structure.py   76 2 0   97%
biobb_structure_utils / utils / sort_gro_residues.py   34 2 0   94%
biobb_structure_utils / utils / str_check_add_hydrogens.py   53 5 0   91%
biobb_structure_utils / utils / structure_check.py   47 4 0   91%
Total   1403 160 0   89%

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