Coverage report: 34%

Files Functions Classes

coverage.py v7.15.3, created at 2026-08-03 13:34 +0000

File function   statements missing excluded   coverage
biobb_vs/__init__.py (no function)   4 0 0   100%
biobb_vs/fpocket/__init__.py (no function)   5 0 0   100%
biobb_vs/fpocket/common.py check_input_path   8 8 0   0%
biobb_vs/fpocket/common.py check_output_path   10 10 0   0%
biobb_vs/fpocket/common.py is_valid_file   2 2 0   0%
biobb_vs/fpocket/common.py check_range   7 7 0   0%
biobb_vs/fpocket/common.py process_output_fpocket   38 38 0   0%
biobb_vs/fpocket/common.py process_output_fpocket_filter   6 6 0   0%
biobb_vs/fpocket/common.py (no function)   10 0 0   100%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.__init__   10 10 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.check_data_params   3 3 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.score_matcher   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.druggability_score_matcher   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.volume_matcher   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.launch   37 37 0   0%
biobb_vs/fpocket/fpocket_filter.py fpocket_filter   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py (no function)   20 1 0   95%
biobb_vs/fpocket/fpocket_run.py FPocketRun.__init__   12 12 0   0%
biobb_vs/fpocket/fpocket_run.py FPocketRun.check_data_params   3 3 0   0%
biobb_vs/fpocket/fpocket_run.py FPocketRun.launch   27 27 0   0%
biobb_vs/fpocket/fpocket_run.py fpocket_run   1 1 0   0%
biobb_vs/fpocket/fpocket_run.py (no function)   17 1 0   94%
biobb_vs/fpocket/fpocket_select.py FPocketSelect.__init__   8 8 0   0%
biobb_vs/fpocket/fpocket_select.py FPocketSelect.check_data_params   3 3 0   0%
biobb_vs/fpocket/fpocket_select.py FPocketSelect.launch   19 19 0   0%
biobb_vs/fpocket/fpocket_select.py fpocket_select   1 1 0   0%
biobb_vs/fpocket/fpocket_select.py (no function)   17 1 0   94%
biobb_vs/gnina/__init__.py (no function)   3 0 0   100%
biobb_vs/gnina/common.py check_input_path   9 4 0   56%
biobb_vs/gnina/common.py check_output_path   11 5 0   55%
biobb_vs/gnina/common.py is_valid_file   2 0 0   100%
biobb_vs/gnina/common.py check_gzip_extension   5 2 0   60%
biobb_vs/gnina/common.py open_sdf   3 1 0   67%
biobb_vs/gnina/common.py read_sdf_records   23 1 0   96%
biobb_vs/gnina/common.py parse_sdf_record   23 2 0   91%
biobb_vs/gnina/common.py to_number   4 2 0   50%
biobb_vs/gnina/common.py process_output_gnina   16 16 0   0%
biobb_vs/gnina/common.py (no function)   16 0 0   100%
biobb_vs/gnina/gnina_run.py GninaRun.__init__   26 26 0   0%
biobb_vs/gnina/gnina_run.py GninaRun.check_data_params   12 12 0   0%
biobb_vs/gnina/gnina_run.py GninaRun.calculate_box   9 9 0   0%
biobb_vs/gnina/gnina_run.py GninaRun.cmd_path   3 3 0   0%
biobb_vs/gnina/gnina_run.py GninaRun.build_cmd   24 24 0   0%
biobb_vs/gnina/gnina_run.py GninaRun.launch   15 15 0   0%
biobb_vs/gnina/gnina_run.py gnina_run   1 1 0   0%
biobb_vs/gnina/gnina_run.py (no function)   21 1 0   95%
biobb_vs/gnina/gnina_select_pose.py GninaSelectPose.__init__   10 0 0   100%
biobb_vs/gnina/gnina_select_pose.py GninaSelectPose.check_data_params   5 0 0   100%
biobb_vs/gnina/gnina_select_pose.py GninaSelectPose.select_record   17 2 0   88%
biobb_vs/gnina/gnina_select_pose.py GninaSelectPose.launch   14 1 0   93%
biobb_vs/gnina/gnina_select_pose.py gnina_select_pose   1 0 0   100%
biobb_vs/gnina/gnina_select_pose.py (no function)   17 1 0   94%
biobb_vs/test/__init__.py (no function)   0 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_run.py TestGninaRun.setup_class   1 1 0   0%
biobb_vs/test/unitests/test_gnina/test_gnina_run.py TestGninaRun.teardown_class   2 2 0   0%
biobb_vs/test/unitests/test_gnina/test_gnina_run.py TestGninaRun.test_gnina_run   4 4 0   0%
biobb_vs/test/unitests/test_gnina/test_gnina_run.py TestGninaRunBox.setup_class   1 1 0   0%
biobb_vs/test/unitests/test_gnina/test_gnina_run.py TestGninaRunBox.teardown_class   2 2 0   0%
biobb_vs/test/unitests/test_gnina/test_gnina_run.py TestGninaRunBox.test_gnina_run_box   2 2 0   0%
biobb_vs/test/unitests/test_gnina/test_gnina_run.py (no function)   15 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPose.setup_class   1 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPose.teardown_class   2 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPose.test_gnina_select_pose   3 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPose.test_gnina_select_pose_out_of_range   2 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPose.test_gnina_select_pose_unknown_sort_by   2 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPose.test_gnina_select_pose_unknown_ligand   2 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPoseSorted.setup_class   1 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPoseSorted.teardown_class   2 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py TestGninaSelectPoseSorted.test_gnina_select_pose_sorted   3 0 0   100%
biobb_vs/test/unitests/test_gnina/test_gnina_select_pose.py (no function)   14 0 0   100%
biobb_vs/utils/__init__.py (no function)   3 0 0   100%
biobb_vs/utils/bindingsite.py BindingSite.__init__   13 13 0   0%
biobb_vs/utils/bindingsite.py BindingSite.check_data_params   3 3 0   0%
biobb_vs/utils/bindingsite.py BindingSite.launch   123 123 0   0%
biobb_vs/utils/bindingsite.py bindingsite   1 1 0   0%
biobb_vs/utils/bindingsite.py (no function)   24 1 0   96%
biobb_vs/utils/box.py Box.__init__   9 9 0   0%
biobb_vs/utils/box.py Box.check_data_params   2 2 0   0%
biobb_vs/utils/box.py Box.launch   44 44 0   0%
biobb_vs/utils/box.py box   1 1 0   0%
biobb_vs/utils/box.py (no function)   17 1 0   94%
biobb_vs/utils/box_residues.py BoxResidues.__init__   11 11 0   0%
biobb_vs/utils/box_residues.py BoxResidues.check_data_params   2 2 0   0%
biobb_vs/utils/box_residues.py BoxResidues.launch   52 52 0   0%
biobb_vs/utils/box_residues.py box_residues   1 1 0   0%
biobb_vs/utils/box_residues.py (no function)   24 1 0   96%
biobb_vs/utils/common.py check_input_path   8 8 0   0%
biobb_vs/utils/common.py check_output_path   10 10 0   0%
biobb_vs/utils/common.py is_valid_file   2 2 0   0%
biobb_vs/utils/common.py get_residue_by_id   4 4 0   0%
biobb_vs/utils/common.py get_pdb_sequence   6 6 0   0%
biobb_vs/utils/common.py get_pdb_sequence.aa   1 1 0   0%
biobb_vs/utils/common.py get_sequence_nucs   4 4 0   0%
biobb_vs/utils/common.py align_sequences   21 21 0   0%
biobb_vs/utils/common.py calculate_alignment_identity   5 5 0   0%
biobb_vs/utils/common.py get_ligand_residues   18 18 0   0%
biobb_vs/utils/common.py get_box_coordinates   16 16 0   0%
biobb_vs/utils/common.py __ions   1 1 0   0%
biobb_vs/utils/common.py __modres   1 1 0   0%
biobb_vs/utils/common.py _from_string_to_list   8 8 0   0%
biobb_vs/utils/common.py (no function)   27 0 0   100%
biobb_vs/utils/extract_model_pdbqt.py ExtractModelPDBQT.__init__   8 8 0   0%
biobb_vs/utils/extract_model_pdbqt.py ExtractModelPDBQT.check_data_params   2 2 0   0%
biobb_vs/utils/extract_model_pdbqt.py ExtractModelPDBQT.launch   34 34 0   0%
biobb_vs/utils/extract_model_pdbqt.py extract_model_pdbqt   1 1 0   0%
biobb_vs/utils/extract_model_pdbqt.py (no function)   23 1 0   96%
biobb_vs/vina/__init__.py (no function)   3 0 0   100%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.__init__   13 13 0   0%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.check_data_params   5 5 0   0%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.calculate_box   9 9 0   0%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.launch   14 14 0   0%
biobb_vs/vina/autodock_vina_run.py autodock_vina_run   1 1 0   0%
biobb_vs/vina/autodock_vina_run.py (no function)   17 1 0   94%
biobb_vs/vina/common.py check_input_path   8 8 0   0%
biobb_vs/vina/common.py check_output_path   10 10 0   0%
biobb_vs/vina/common.py is_valid_file   2 2 0   0%
biobb_vs/vina/common.py check_mgltools_path   4 4 0   0%
biobb_vs/vina/common.py (no function)   7 0 0   100%
Total     1244 825 0   34%

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