Coverage report: 40%

Files Functions Classes

coverage.py v7.14.1, created at 2026-05-28 09:09 +0000

File function   statements missing excluded   coverage
biobb_vs/__init__.py (no function)   4 0 0   100%
biobb_vs/fpocket/__init__.py (no function)   5 0 0   100%
biobb_vs/fpocket/common.py check_input_path   8 4 0   50%
biobb_vs/fpocket/common.py check_output_path   10 5 0   50%
biobb_vs/fpocket/common.py is_valid_file   2 0 0   100%
biobb_vs/fpocket/common.py check_range   7 7 0   0%
biobb_vs/fpocket/common.py process_output_fpocket   38 7 0   82%
biobb_vs/fpocket/common.py process_output_fpocket_filter   6 6 0   0%
biobb_vs/fpocket/common.py (no function)   10 0 0   100%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.__init__   10 10 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.check_data_params   3 3 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.score_matcher   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.druggability_score_matcher   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.volume_matcher   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py FPocketFilter.launch   37 37 0   0%
biobb_vs/fpocket/fpocket_filter.py fpocket_filter   1 1 0   0%
biobb_vs/fpocket/fpocket_filter.py (no function)   20 1 0   95%
biobb_vs/fpocket/fpocket_run.py FPocketRun.__init__   12 0 0   100%
biobb_vs/fpocket/fpocket_run.py FPocketRun.check_data_params   3 0 0   100%
biobb_vs/fpocket/fpocket_run.py FPocketRun.launch   27 4 0   85%
biobb_vs/fpocket/fpocket_run.py fpocket_run   1 0 0   100%
biobb_vs/fpocket/fpocket_run.py (no function)   17 1 0   94%
biobb_vs/fpocket/fpocket_select.py FPocketSelect.__init__   8 8 0   0%
biobb_vs/fpocket/fpocket_select.py FPocketSelect.check_data_params   3 3 0   0%
biobb_vs/fpocket/fpocket_select.py FPocketSelect.launch   19 19 0   0%
biobb_vs/fpocket/fpocket_select.py fpocket_select   1 1 0   0%
biobb_vs/fpocket/fpocket_select.py (no function)   17 1 0   94%
biobb_vs/test/__init__.py (no function)   0 0 0   100%
biobb_vs/test/unitests/test_fpocket/test_fpocket_run.py TestFPocketRun.setup_class   1 0 0   100%
biobb_vs/test/unitests/test_fpocket/test_fpocket_run.py TestFPocketRun.teardown_class   2 0 0   100%
biobb_vs/test/unitests/test_fpocket/test_fpocket_run.py TestFPocketRun.test_fpocket_run   3 0 0   100%
biobb_vs/test/unitests/test_fpocket/test_fpocket_run.py (no function)   6 0 0   100%
biobb_vs/test/unitests/test_vina/test_autodock_vina_run.py TestAutoDockVinaRun.setup_class   1 0 0   100%
biobb_vs/test/unitests/test_vina/test_autodock_vina_run.py TestAutoDockVinaRun.teardown_class   2 0 0   100%
biobb_vs/test/unitests/test_vina/test_autodock_vina_run.py TestAutoDockVinaRun.test_autodock_vina_run   3 0 0   100%
biobb_vs/test/unitests/test_vina/test_autodock_vina_run.py (no function)   6 0 0   100%
biobb_vs/utils/__init__.py (no function)   3 0 0   100%
biobb_vs/utils/bindingsite.py BindingSite.__init__   13 13 0   0%
biobb_vs/utils/bindingsite.py BindingSite.check_data_params   3 3 0   0%
biobb_vs/utils/bindingsite.py BindingSite.launch   123 123 0   0%
biobb_vs/utils/bindingsite.py bindingsite   1 1 0   0%
biobb_vs/utils/bindingsite.py (no function)   24 1 0   96%
biobb_vs/utils/box.py Box.__init__   9 9 0   0%
biobb_vs/utils/box.py Box.check_data_params   2 2 0   0%
biobb_vs/utils/box.py Box.launch   43 43 0   0%
biobb_vs/utils/box.py box   1 1 0   0%
biobb_vs/utils/box.py (no function)   17 1 0   94%
biobb_vs/utils/box_residues.py BoxResidues.__init__   11 11 0   0%
biobb_vs/utils/box_residues.py BoxResidues.check_data_params   2 2 0   0%
biobb_vs/utils/box_residues.py BoxResidues.launch   51 51 0   0%
biobb_vs/utils/box_residues.py box_residues   1 1 0   0%
biobb_vs/utils/box_residues.py (no function)   24 1 0   96%
biobb_vs/utils/common.py check_input_path   8 8 0   0%
biobb_vs/utils/common.py check_output_path   10 10 0   0%
biobb_vs/utils/common.py is_valid_file   2 2 0   0%
biobb_vs/utils/common.py get_residue_by_id   4 4 0   0%
biobb_vs/utils/common.py get_pdb_sequence   6 6 0   0%
biobb_vs/utils/common.py get_pdb_sequence.aa   1 1 0   0%
biobb_vs/utils/common.py get_sequence_nucs   4 4 0   0%
biobb_vs/utils/common.py align_sequences   21 21 0   0%
biobb_vs/utils/common.py calculate_alignment_identity   5 5 0   0%
biobb_vs/utils/common.py get_ligand_residues   18 18 0   0%
biobb_vs/utils/common.py get_box_coordinates   16 16 0   0%
biobb_vs/utils/common.py __ions   1 1 0   0%
biobb_vs/utils/common.py __modres   1 1 0   0%
biobb_vs/utils/common.py _from_string_to_list   8 8 0   0%
biobb_vs/utils/common.py (no function)   27 0 0   100%
biobb_vs/utils/extract_model_pdbqt.py ExtractModelPDBQT.__init__   8 8 0   0%
biobb_vs/utils/extract_model_pdbqt.py ExtractModelPDBQT.check_data_params   2 2 0   0%
biobb_vs/utils/extract_model_pdbqt.py ExtractModelPDBQT.launch   34 34 0   0%
biobb_vs/utils/extract_model_pdbqt.py extract_model_pdbqt   1 1 0   0%
biobb_vs/utils/extract_model_pdbqt.py (no function)   23 1 0   96%
biobb_vs/vina/__init__.py (no function)   3 0 0   100%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.__init__   13 0 0   100%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.check_data_params   5 0 0   100%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.calculate_box   9 1 0   89%
biobb_vs/vina/autodock_vina_run.py AutoDockVinaRun.launch   14 2 0   86%
biobb_vs/vina/autodock_vina_run.py autodock_vina_run   1 0 0   100%
biobb_vs/vina/autodock_vina_run.py (no function)   17 1 0   94%
biobb_vs/vina/common.py check_input_path   8 4 0   50%
biobb_vs/vina/common.py check_output_path   10 5 0   50%
biobb_vs/vina/common.py is_valid_file   2 0 0   100%
biobb_vs/vina/common.py check_mgltools_path   4 4 0   0%
biobb_vs/vina/common.py (no function)   7 0 0   100%
Total     917 552 0   40%

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