Coverage report: 89%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-22 12:49 +0000

File class   statements missing excluded   coverage
biobb_chemistry / __init__.py (no class)   4 0 0   100%
biobb_chemistry / acpype / __init__.py (no class)   7 0 0   100%
biobb_chemistry / acpype / acpype_convert_amber_to_gmx.py AcpypeConvertAMBERtoGMX   38 3 0   92%
biobb_chemistry / acpype / acpype_convert_amber_to_gmx.py (no class)   16 1 0   94%
biobb_chemistry / acpype / acpype_params_ac.py AcpypeParamsAC   45 3 0   93%
biobb_chemistry / acpype / acpype_params_ac.py (no class)   16 1 0   94%
biobb_chemistry / acpype / acpype_params_cns.py AcpypeParamsCNS   45 3 0   93%
biobb_chemistry / acpype / acpype_params_cns.py (no class)   16 1 0   94%
biobb_chemistry / acpype / acpype_params_gmx.py AcpypeParamsGMX   44 3 0   93%
biobb_chemistry / acpype / acpype_params_gmx.py (no class)   16 1 0   94%
biobb_chemistry / acpype / acpype_params_gmx_opls.py AcpypeParamsGMXOPLS   43 3 0   93%
biobb_chemistry / acpype / acpype_params_gmx_opls.py (no class)   16 1 0   94%
biobb_chemistry / acpype / common.py (no class)   108 15 0   86%
biobb_chemistry / ambertools / __init__.py (no class)   4 0 0   100%
biobb_chemistry / ambertools / common.py (no class)   30 9 0   70%
biobb_chemistry / ambertools / reduce_add_hydrogens.py ReduceAddHydrogens   83 16 0   81%
biobb_chemistry / ambertools / reduce_add_hydrogens.py (no class)   16 1 0   94%
biobb_chemistry / ambertools / reduce_remove_hydrogens.py ReduceRemoveHydrogens   27 1 0   96%
biobb_chemistry / ambertools / reduce_remove_hydrogens.py (no class)   16 1 0   94%
biobb_chemistry / babelm / __init__.py (no class)   6 0 0   100%
biobb_chemistry / babelm / babel_add_hydrogens.py BabelAddHydrogens   60 3 0   95%
biobb_chemistry / babelm / babel_add_hydrogens.py (no class)   16 1 0   94%
biobb_chemistry / babelm / babel_convert.py BabelConvert   63 4 0   94%
biobb_chemistry / babelm / babel_convert.py (no class)   16 1 0   94%
biobb_chemistry / babelm / babel_minimize.py BabelMinimize   56 1 0   98%
biobb_chemistry / babelm / babel_minimize.py (no class)   17 1 0   94%
biobb_chemistry / babelm / babel_remove_hydrogens.py BabelRemoveHydrogens   60 3 0   95%
biobb_chemistry / babelm / babel_remove_hydrogens.py (no class)   16 1 0   94%
biobb_chemistry / babelm / common.py (no class)   139 51 0   63%
biobb_chemistry / test / __init__.py (no class)   0 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_amber2gmx.py TestAcpypeAmber2GMX   8 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_amber2gmx.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_ac.py TestAcpypeParamsAC   9 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_ac.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_cns.py TestAcpypeParamsCNS   6 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_cns.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_gmx.py TestAcpypeParamsGMX   9 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_gmx.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_gmx_opls.py TestAcpypeParamsGMXOPLS   6 0 0   100%
biobb_chemistry / test / unitests / test_acpype / test_acpype_params_gmx_opls.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_ambertools / test_reduce_add_hydrogens.py TestReduceAddHydrogens   5 0 0   100%
biobb_chemistry / test / unitests / test_ambertools / test_reduce_add_hydrogens.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_ambertools / test_reduce_remove_hydrogens.py TestReduceRemoveHydrogens   5 0 0   100%
biobb_chemistry / test / unitests / test_ambertools / test_reduce_remove_hydrogens.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_add_hydrogens.py TestBabelAddHydrogens   5 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_add_hydrogens.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_convert.py TestBabelConvert   5 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_convert.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_minimize.py TestBabelMinimize   6 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_minimize.py (no class)   6 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_remove_hydrogens.py TestBabelRemoveHydrogens   5 0 0   100%
biobb_chemistry / test / unitests / test_babel / test_babel_remove_hydrogens.py (no class)   6 0 0   100%
Total     1174 129 0   89%

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