Coverage report: 81%

Files Functions Classes

coverage.py v7.6.12, created at 2025-03-12 09:28 +0000

File class statements missing excluded coverage
biobb_chemistry/__init__.py (no class) 4 0 0 100%
biobb_chemistry/acpype/__init__.py (no class) 7 0 0 100%
biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py AcpypeConvertAMBERtoGMX 38 3 0 92%
biobb_chemistry/acpype/acpype_convert_amber_to_gmx.py (no class) 29 13 0 55%
biobb_chemistry/acpype/acpype_params_ac.py AcpypeParamsAC 45 3 0 93%
biobb_chemistry/acpype/acpype_params_ac.py (no class) 30 14 0 53%
biobb_chemistry/acpype/acpype_params_cns.py AcpypeParamsCNS 45 3 0 93%
biobb_chemistry/acpype/acpype_params_cns.py (no class) 30 14 0 53%
biobb_chemistry/acpype/acpype_params_gmx.py AcpypeParamsGMX 44 3 0 93%
biobb_chemistry/acpype/acpype_params_gmx.py (no class) 29 13 0 55%
biobb_chemistry/acpype/acpype_params_gmx_opls.py AcpypeParamsGMXOPLS 43 3 0 93%
biobb_chemistry/acpype/acpype_params_gmx_opls.py (no class) 28 12 0 57%
biobb_chemistry/acpype/common.py (no class) 108 15 0 86%
biobb_chemistry/ambertools/__init__.py (no class) 4 0 0 100%
biobb_chemistry/ambertools/common.py (no class) 30 9 0 70%
biobb_chemistry/ambertools/reduce_add_hydrogens.py ReduceAddHydrogens 83 16 0 81%
biobb_chemistry/ambertools/reduce_add_hydrogens.py (no class) 27 11 0 59%
biobb_chemistry/ambertools/reduce_remove_hydrogens.py ReduceRemoveHydrogens 27 1 0 96%
biobb_chemistry/ambertools/reduce_remove_hydrogens.py (no class) 27 11 0 59%
biobb_chemistry/babelm/__init__.py (no class) 6 0 0 100%
biobb_chemistry/babelm/babel_add_hydrogens.py BabelAddHydrogens 60 3 0 95%
biobb_chemistry/babelm/babel_add_hydrogens.py (no class) 27 11 0 59%
biobb_chemistry/babelm/babel_convert.py BabelConvert 63 4 0 94%
biobb_chemistry/babelm/babel_convert.py (no class) 27 11 0 59%
biobb_chemistry/babelm/babel_minimize.py BabelMinimize 56 1 0 98%
biobb_chemistry/babelm/babel_minimize.py (no class) 28 11 0 61%
biobb_chemistry/babelm/babel_remove_hydrogens.py BabelRemoveHydrogens 60 3 0 95%
biobb_chemistry/babelm/babel_remove_hydrogens.py (no class) 27 11 0 59%
biobb_chemistry/babelm/common.py (no class) 139 51 0 63%
biobb_chemistry/test/__init__.py (no class) 0 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_amber2gmx.py TestAcpypeAmber2GMX 8 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_amber2gmx.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_ac.py TestAcpypeParamsAC 9 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_ac.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_cns.py TestAcpypeParamsCNS 6 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_cns.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_gmx.py TestAcpypeParamsGMX 9 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_gmx.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_gmx_opls.py TestAcpypeParamsGMXOPLS 6 0 0 100%
biobb_chemistry/test/unitests/test_acpype/test_acpype_params_gmx_opls.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_ambertools/test_reduce_add_hydrogens.py TestReduceAddHydrogens 5 0 0 100%
biobb_chemistry/test/unitests/test_ambertools/test_reduce_add_hydrogens.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_ambertools/test_reduce_remove_hydrogens.py TestReduceRemoveHydrogens 5 0 0 100%
biobb_chemistry/test/unitests/test_ambertools/test_reduce_remove_hydrogens.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_add_hydrogens.py TestBabelAddHydrogens 5 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_add_hydrogens.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_convert.py TestBabelConvert 5 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_convert.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_minimize.py TestBabelMinimize 6 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_minimize.py (no class) 6 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_remove_hydrogens.py TestBabelRemoveHydrogens 5 0 0 100%
biobb_chemistry/test/unitests/test_babel/test_babel_remove_hydrogens.py (no class) 6 0 0 100%
Total   1306 250 0 81%

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