Coverage report: 79%

Files Functions Classes

coverage.py v7.14.1, created at 2026-05-28 06:50 +0000

File class   statements missing excluded   coverage
biobb_gromacs/__init__.py (no class)   4 0 0   100%
biobb_gromacs/gromacs/__init__.py (no class)   14 0 0   100%
biobb_gromacs/gromacs/common.py (no class)   204 48 0   76%
biobb_gromacs/gromacs/convert_tpr.py ConvertTpr   39 5 0   87%
biobb_gromacs/gromacs/convert_tpr.py (no class)   15 1 0   93%
biobb_gromacs/gromacs/editconf.py Editconf   45 7 0   84%
biobb_gromacs/gromacs/editconf.py (no class)   16 1 0   94%
biobb_gromacs/gromacs/genion.py Genion   62 9 0   85%
biobb_gromacs/gromacs/genion.py (no class)   17 1 0   94%
biobb_gromacs/gromacs/genrestr.py Genrestr   43 4 0   91%
biobb_gromacs/gromacs/genrestr.py (no class)   16 1 0   94%
biobb_gromacs/gromacs/gmxselect.py Gmxselect   49 12 0   76%
biobb_gromacs/gromacs/gmxselect.py (no class)   16 1 0   94%
biobb_gromacs/gromacs/grompp.py Grompp   46 7 0   85%
biobb_gromacs/gromacs/grompp.py (no class)   18 1 0   94%
biobb_gromacs/gromacs/grompp_mdrun.py GromppMdrun   43 1 0   98%
biobb_gromacs/gromacs/grompp_mdrun.py (no class)   17 1 0   94%
biobb_gromacs/gromacs/make_ndx.py MakeNdx   40 5 0   88%
biobb_gromacs/gromacs/make_ndx.py (no class)   16 1 0   94%
biobb_gromacs/gromacs/mdrun.py Mdrun   125 61 0   51%
biobb_gromacs/gromacs/mdrun.py (no class)   17 1 0   94%
biobb_gromacs/gromacs/mdrun_plumed.py MdrunPlumed   155 86 0   45%
biobb_gromacs/gromacs/mdrun_plumed.py (no class)   20 1 0   95%
biobb_gromacs/gromacs/pdb2gmx.py Pdb2gmx   108 23 0   79%
biobb_gromacs/gromacs/pdb2gmx.py (no class)   18 1 0   94%
biobb_gromacs/gromacs/solvate.py Solvate   46 8 0   83%
biobb_gromacs/gromacs/solvate.py (no class)   17 1 0   94%
biobb_gromacs/gromacs/trjcat.py Trjcat   37 3 0   92%
biobb_gromacs/gromacs/trjcat.py (no class)   16 1 0   94%
biobb_gromacs/gromacs_extra/__init__.py (no class)   4 0 0   100%
biobb_gromacs/gromacs_extra/append_ligand.py AppendLigand   106 34 0   68%
biobb_gromacs/gromacs_extra/append_ligand.py (no class)   17 1 0   94%
biobb_gromacs/gromacs_extra/ndx2resttop.py Ndx2resttop   116 37 0   68%
biobb_gromacs/gromacs_extra/ndx2resttop.py (no class)   21 2 0   90%
biobb_gromacs/test/__init__.py (no class)   0 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_convert_tpr.py TestConvertTpr   4 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_convert_tpr.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_editconf.py TestEditconf   5 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_editconf.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_genion.py TestGenion   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_genion.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_genrestr.py TestGenrestr   11 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_genrestr.py (no class)   7 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_gmxselect.py TestGmxselect   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_gmxselect.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_grompp.py TestGrompp   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_grompp.py (no class)   7 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_grompp_mdrun.py TestGromppMdrun   9 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_grompp_mdrun.py (no class)   7 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_make_ndx.py TestMakeNdx   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_make_ndx.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_mdrun.py TestMdrun   9 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_mdrun.py (no class)   7 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_mdrun_plumed.py TestMdrunPlumed   9 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_mdrun_plumed.py (no class)   7 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_pdb2gmx.py TestPdb2gmx   8 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_pdb2gmx.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_solvate.py TestSolvate   8 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_solvate.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_trjcat.py TestSolvate   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs/test_trjcat.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs_extra/test_append_ligand.py TestAppendLigand   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs_extra/test_append_ligand.py (no class)   6 0 0   100%
biobb_gromacs/test/unitests/test_gromacs_extra/test_ndx2resttop.py TestNdx2resttop   5 0 0   100%
biobb_gromacs/test/unitests/test_gromacs_extra/test_ndx2resttop.py (no class)   6 0 0   100%
Total     1742 366 0   79%

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