Coverage report: 88%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-22 10:49 +0000

File function   statements missing excluded   coverage
biobb_haddock / __init__.py (no function)   3 0 0   100%
biobb_haddock / haddock / __init__.py (no function)   2 0 0   100%
biobb_haddock / haddock / capri_eval.py CapriEval.__init__   9 0 0   100%
biobb_haddock / haddock / capri_eval.py CapriEval._handle_config_arguments   2 1 0   50%
biobb_haddock / haddock / capri_eval.py CapriEval._handle_step_output   2 0 0   100%
biobb_haddock / haddock / capri_eval.py capri_eval   1 0 0   100%
biobb_haddock / haddock / capri_eval.py (no function)   12 1 0   92%
biobb_haddock / haddock / clust_fcc.py ClustFCC.__init__   9 0 0   100%
biobb_haddock / haddock / clust_fcc.py ClustFCC._handle_step_output   2 0 0   100%
biobb_haddock / haddock / clust_fcc.py clust_fcc   1 0 0   100%
biobb_haddock / haddock / clust_fcc.py (no function)   10 1 0   90%
biobb_haddock / haddock / common.py HaddockStepBase.copy_step_output   13 1 0   92%
biobb_haddock / haddock / common.py HaddockStepBase.launch   38 14 0   63%
biobb_haddock / haddock / common.py create_cfg   46 4 0   91%
biobb_haddock / haddock / common.py cfg_preset   20 0 0   100%
biobb_haddock / haddock / common.py move_to_container_path   5 5 0   0%
biobb_haddock / haddock / common.py zip_wf_output   3 3 0   0%
biobb_haddock / haddock / common.py (no function)   19 0 0   100%
biobb_haddock / haddock / contact_map.py ContactMap.__init__   9 0 0   100%
biobb_haddock / haddock / contact_map.py ContactMap._handle_step_output   2 0 0   100%
biobb_haddock / haddock / contact_map.py contact_map   1 0 0   100%
biobb_haddock / haddock / contact_map.py (no function)   10 1 0   90%
biobb_haddock / haddock / em_ref.py EMRef.__init__   9 0 0   100%
biobb_haddock / haddock / em_ref.py EMRef._handle_config_arguments   6 3 0   50%
biobb_haddock / haddock / em_ref.py EMRef._handle_step_output   2 0 0   100%
biobb_haddock / haddock / em_ref.py em_ref   1 0 0   100%
biobb_haddock / haddock / em_ref.py (no function)   12 1 0   92%
biobb_haddock / haddock / flex_ref.py FlexRef.__init__   15 2 0   87%
biobb_haddock / haddock / flex_ref.py FlexRef._handle_config_arguments   6 2 0   67%
biobb_haddock / haddock / flex_ref.py FlexRef._handle_step_output   2 0 0   100%
biobb_haddock / haddock / flex_ref.py flex_ref   1 0 0   100%
biobb_haddock / haddock / flex_ref.py (no function)   12 1 0   92%
biobb_haddock / haddock / haddock3_config.py load   4 2 0   50%
biobb_haddock / haddock / haddock3_config.py loads   37 17 0   54%
biobb_haddock / haddock / haddock3_config.py save   2 0 0   100%
biobb_haddock / haddock / haddock3_config.py (no function)   12 0 0   100%
biobb_haddock / haddock / haddock3_extend.py Haddock3Extend.__init__   9 0 0   100%
biobb_haddock / haddock / haddock3_extend.py haddock3_extend   1 0 0   100%
biobb_haddock / haddock / haddock3_extend.py (no function)   9 1 0   89%
biobb_haddock / haddock / haddock3_run.py Haddock3Run.__init__   9 0 0   100%
biobb_haddock / haddock / haddock3_run.py haddock3_run   1 0 0   100%
biobb_haddock / haddock / haddock3_run.py (no function)   9 1 0   89%
biobb_haddock / haddock / rigid_body.py RigidBody.__init__   9 0 0   100%
biobb_haddock / haddock / rigid_body.py RigidBody._handle_config_arguments   6 2 0   67%
biobb_haddock / haddock / rigid_body.py RigidBody._handle_step_output   2 0 0   100%
biobb_haddock / haddock / rigid_body.py rigid_body   1 0 0   100%
biobb_haddock / haddock / rigid_body.py (no function)   12 1 0   92%
biobb_haddock / haddock / sele_top.py SeleTop.__init__   9 0 0   100%
biobb_haddock / haddock / sele_top.py SeleTop._handle_step_output   2 0 0   100%
biobb_haddock / haddock / sele_top.py sele_top   1 0 0   100%
biobb_haddock / haddock / sele_top.py (no function)   10 1 0   90%
biobb_haddock / haddock / sele_top_clusts.py SeleTopClusts.__init__   9 0 0   100%
biobb_haddock / haddock / sele_top_clusts.py SeleTopClusts._handle_step_output   2 0 0   100%
biobb_haddock / haddock / sele_top_clusts.py sele_top_clusts   1 0 0   100%
biobb_haddock / haddock / sele_top_clusts.py (no function)   10 1 0   90%
biobb_haddock / haddock / topology.py Topology.__init__   9 0 0   100%
biobb_haddock / haddock / topology.py Topology.launch   28 4 0   86%
biobb_haddock / haddock / topology.py topology   1 0 0   100%
biobb_haddock / haddock / topology.py (no function)   15 1 0   93%
biobb_haddock / haddock_restraints / __init__.py (no function)   2 0 0   100%
biobb_haddock / haddock_restraints / haddock3_accessibility.py Haddock3Accessibility.__init__   10 0 0   100%
biobb_haddock / haddock_restraints / haddock3_accessibility.py Haddock3Accessibility.launch   31 7 0   77%
biobb_haddock / haddock_restraints / haddock3_accessibility.py haddock3_accessibility   1 0 0   100%
biobb_haddock / haddock_restraints / haddock3_accessibility.py (no function)   15 1 0   93%
biobb_haddock / haddock_restraints / haddock3_actpass_to_ambig.py Haddock3ActpassToAmbig.__init__   9 0 0   100%
biobb_haddock / haddock_restraints / haddock3_actpass_to_ambig.py Haddock3ActpassToAmbig.launch   27 11 0   59%
biobb_haddock / haddock_restraints / haddock3_actpass_to_ambig.py haddock3_actpass_to_ambig   1 0 0   100%
biobb_haddock / haddock_restraints / haddock3_actpass_to_ambig.py (no function)   12 1 0   92%
biobb_haddock / haddock_restraints / haddock3_passive_from_active.py Haddock3PassiveFromActive.__init__   17 4 0   76%
biobb_haddock / haddock_restraints / haddock3_passive_from_active.py Haddock3PassiveFromActive.launch   23 4 0   83%
biobb_haddock / haddock_restraints / haddock3_passive_from_active.py haddock3_passive_from_active   1 0 0   100%
biobb_haddock / haddock_restraints / haddock3_passive_from_active.py (no function)   13 1 0   92%
biobb_haddock / haddock_restraints / haddock3_restrain_bodies.py Haddock3RestrainBodies.__init__   8 0 0   100%
biobb_haddock / haddock_restraints / haddock3_restrain_bodies.py Haddock3RestrainBodies.launch   20 5 0   75%
biobb_haddock / haddock_restraints / haddock3_restrain_bodies.py haddock3_restrain_bodies   1 0 0   100%
biobb_haddock / haddock_restraints / haddock3_restrain_bodies.py (no function)   12 1 0   92%
biobb_haddock / test / __init__.py (no function)   0 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_capri_eval.py TestCapriEval.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_capri_eval.py TestCapriEval.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_capri_eval.py TestCapriEval.test_capri_eval   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_capri_eval.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_clust_fcc.py TestClustFCC.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_clust_fcc.py TestClustFCC.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_clust_fcc.py TestClustFCC.test_clust_fcc   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_clust_fcc.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_common.py TestCreateCfg.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_common.py TestCreateCfg.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_common.py TestCreateCfg.test_create_cfg_step   8 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_common.py TestCreateCfg.test_create_cfg_run   8 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_common.py (no function)   8 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_contact_map.py TestContactMap.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_contact_map.py TestContactMap.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_contact_map.py TestContactMap.test_contact_map   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_contact_map.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_em_ref.py TestEMRef.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_em_ref.py TestEMRef.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_em_ref.py TestEMRef.test_em_ref   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_em_ref.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_flex_ref.py TestFlexRef.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_flex_ref.py TestFlexRef.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_flex_ref.py TestFlexRef.test_flex_ref   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_flex_ref.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_extend.py TestHaddock3Extend.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_extend.py TestHaddock3Extend.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_extend.py TestHaddock3Extend.test_haddock3_extend   2 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_extend.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_run.py TestHaddock3Run.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_run.py TestHaddock3Run.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_run.py TestHaddock3Run.test_haddock3_run   2 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_haddock3_run.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_rigid_body.py TestRigidBody.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_rigid_body.py TestRigidBody.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_rigid_body.py TestRigidBody.test_rigid_body   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_rigid_body.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top.py TestSeleTop.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top.py TestSeleTop.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top.py TestSeleTop.test_sele_top   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top_clusts.py TestSeleTopClusts.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top_clusts.py TestSeleTopClusts.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top_clusts.py TestSeleTopClusts.test_sele_top_clusts   3 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_sele_top_clusts.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_topology.py TestTopology.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_topology.py TestTopology.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_topology.py TestTopology.test_topology   4 0 0   100%
biobb_haddock / test / unitests / test_haddock / test_topology.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_accessibility.py TestHaddockAccessibility.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_accessibility.py TestHaddockAccessibility.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_accessibility.py TestHaddockAccessibility.test_capri_eval   4 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_accessibility.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_actpass_to_ambig.py TestHaddockActpassToAmbig.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_actpass_to_ambig.py TestHaddockActpassToAmbig.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_actpass_to_ambig.py TestHaddockActpassToAmbig.test_haddock3_actpass_to_ambig   3 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_actpass_to_ambig.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_passive_from_active.py TestHaddockPassiveFromActive.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_passive_from_active.py TestHaddockPassiveFromActive.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_passive_from_active.py TestHaddockPassiveFromActive.test_haddock3_passive_from_active   3 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_passive_from_active.py (no function)   6 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_restrain_bodies.py TestHaddockRestrainBodies.setup_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_restrain_bodies.py TestHaddockRestrainBodies.teardown_class   1 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_restrain_bodies.py TestHaddockRestrainBodies.test_capri_eval   3 0 0   100%
biobb_haddock / test / unitests / test_haddock_restraints / test_haddock3_restrain_bodies.py (no function)   6 0 0   100%
Total     899 106 0   88%

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