Coverage report: 88%

Files Functions Classes

coverage.py v7.10.6, created at 2025-09-03 15:55 +0000

File function statements missing excluded coverage
biobb_haddock/__init__.py (no function) 3 0 0 100%
biobb_haddock/haddock/__init__.py (no function) 2 0 0 100%
biobb_haddock/haddock/capri_eval.py CapriEval.__init__ 9 0 0 100%
biobb_haddock/haddock/capri_eval.py CapriEval._handle_config_arguments 2 1 0 50%
biobb_haddock/haddock/capri_eval.py CapriEval._handle_step_output 2 0 0 100%
biobb_haddock/haddock/capri_eval.py capri_eval 1 0 0 100%
biobb_haddock/haddock/capri_eval.py (no function) 12 1 0 92%
biobb_haddock/haddock/clust_fcc.py ClustFCC.__init__ 9 0 0 100%
biobb_haddock/haddock/clust_fcc.py ClustFCC._handle_step_output 2 0 0 100%
biobb_haddock/haddock/clust_fcc.py clust_fcc 1 0 0 100%
biobb_haddock/haddock/clust_fcc.py (no function) 10 1 0 90%
biobb_haddock/haddock/common.py HaddockStepBase.copy_step_output 13 1 0 92%
biobb_haddock/haddock/common.py HaddockStepBase.launch 38 14 0 63%
biobb_haddock/haddock/common.py create_cfg 46 4 0 91%
biobb_haddock/haddock/common.py cfg_preset 20 0 0 100%
biobb_haddock/haddock/common.py move_to_container_path 5 5 0 0%
biobb_haddock/haddock/common.py zip_wf_output 3 3 0 0%
biobb_haddock/haddock/common.py (no function) 19 0 0 100%
biobb_haddock/haddock/contact_map.py ContactMap.__init__ 9 0 0 100%
biobb_haddock/haddock/contact_map.py ContactMap._handle_step_output 2 0 0 100%
biobb_haddock/haddock/contact_map.py contact_map 1 0 0 100%
biobb_haddock/haddock/contact_map.py (no function) 10 1 0 90%
biobb_haddock/haddock/em_ref.py EMRef.__init__ 9 0 0 100%
biobb_haddock/haddock/em_ref.py EMRef._handle_config_arguments 6 3 0 50%
biobb_haddock/haddock/em_ref.py EMRef._handle_step_output 2 0 0 100%
biobb_haddock/haddock/em_ref.py em_ref 1 0 0 100%
biobb_haddock/haddock/em_ref.py (no function) 12 1 0 92%
biobb_haddock/haddock/flex_ref.py FlexRef.__init__ 15 2 0 87%
biobb_haddock/haddock/flex_ref.py FlexRef._handle_config_arguments 6 2 0 67%
biobb_haddock/haddock/flex_ref.py FlexRef._handle_step_output 2 0 0 100%
biobb_haddock/haddock/flex_ref.py flex_ref 1 0 0 100%
biobb_haddock/haddock/flex_ref.py (no function) 12 1 0 92%
biobb_haddock/haddock/haddock3_config.py load 4 2 0 50%
biobb_haddock/haddock/haddock3_config.py loads 37 17 0 54%
biobb_haddock/haddock/haddock3_config.py save 2 0 0 100%
biobb_haddock/haddock/haddock3_config.py (no function) 12 0 0 100%
biobb_haddock/haddock/haddock3_extend.py Haddock3Extend.__init__ 9 0 0 100%
biobb_haddock/haddock/haddock3_extend.py haddock3_extend 1 0 0 100%
biobb_haddock/haddock/haddock3_extend.py (no function) 9 1 0 89%
biobb_haddock/haddock/haddock3_run.py Haddock3Run.__init__ 9 0 0 100%
biobb_haddock/haddock/haddock3_run.py haddock3_run 1 0 0 100%
biobb_haddock/haddock/haddock3_run.py (no function) 9 1 0 89%
biobb_haddock/haddock/rigid_body.py RigidBody.__init__ 9 0 0 100%
biobb_haddock/haddock/rigid_body.py RigidBody._handle_config_arguments 6 2 0 67%
biobb_haddock/haddock/rigid_body.py RigidBody._handle_step_output 2 0 0 100%
biobb_haddock/haddock/rigid_body.py rigid_body 1 0 0 100%
biobb_haddock/haddock/rigid_body.py (no function) 12 1 0 92%
biobb_haddock/haddock/sele_top.py SeleTop.__init__ 9 0 0 100%
biobb_haddock/haddock/sele_top.py SeleTop._handle_step_output 2 0 0 100%
biobb_haddock/haddock/sele_top.py sele_top 1 0 0 100%
biobb_haddock/haddock/sele_top.py (no function) 10 1 0 90%
biobb_haddock/haddock/sele_top_clusts.py SeleTopClusts.__init__ 9 0 0 100%
biobb_haddock/haddock/sele_top_clusts.py SeleTopClusts._handle_step_output 2 0 0 100%
biobb_haddock/haddock/sele_top_clusts.py sele_top_clusts 1 0 0 100%
biobb_haddock/haddock/sele_top_clusts.py (no function) 10 1 0 90%
biobb_haddock/haddock/topology.py Topology.__init__ 9 0 0 100%
biobb_haddock/haddock/topology.py Topology.launch 28 4 0 86%
biobb_haddock/haddock/topology.py topology 1 0 0 100%
biobb_haddock/haddock/topology.py (no function) 15 1 0 93%
biobb_haddock/haddock_restraints/__init__.py (no function) 2 0 0 100%
biobb_haddock/haddock_restraints/haddock3_accessibility.py Haddock3Accessibility.__init__ 10 0 0 100%
biobb_haddock/haddock_restraints/haddock3_accessibility.py Haddock3Accessibility.launch 31 7 0 77%
biobb_haddock/haddock_restraints/haddock3_accessibility.py haddock3_accessibility 1 0 0 100%
biobb_haddock/haddock_restraints/haddock3_accessibility.py (no function) 15 1 0 93%
biobb_haddock/haddock_restraints/haddock3_actpass_to_ambig.py Haddock3ActpassToAmbig.__init__ 9 0 0 100%
biobb_haddock/haddock_restraints/haddock3_actpass_to_ambig.py Haddock3ActpassToAmbig.launch 27 11 0 59%
biobb_haddock/haddock_restraints/haddock3_actpass_to_ambig.py haddock3_actpass_to_ambig 1 0 0 100%
biobb_haddock/haddock_restraints/haddock3_actpass_to_ambig.py (no function) 12 1 0 92%
biobb_haddock/haddock_restraints/haddock3_passive_from_active.py Haddock3PassiveFromActive.__init__ 17 4 0 76%
biobb_haddock/haddock_restraints/haddock3_passive_from_active.py Haddock3PassiveFromActive.launch 23 4 0 83%
biobb_haddock/haddock_restraints/haddock3_passive_from_active.py haddock3_passive_from_active 1 0 0 100%
biobb_haddock/haddock_restraints/haddock3_passive_from_active.py (no function) 13 1 0 92%
biobb_haddock/haddock_restraints/haddock3_restrain_bodies.py Haddock3RestrainBodies.__init__ 8 0 0 100%
biobb_haddock/haddock_restraints/haddock3_restrain_bodies.py Haddock3RestrainBodies.launch 20 5 0 75%
biobb_haddock/haddock_restraints/haddock3_restrain_bodies.py haddock3_restrain_bodies 1 0 0 100%
biobb_haddock/haddock_restraints/haddock3_restrain_bodies.py (no function) 12 1 0 92%
biobb_haddock/test/__init__.py (no function) 0 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_capri_eval.py TestCapriEval.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_capri_eval.py TestCapriEval.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_capri_eval.py TestCapriEval.test_capri_eval 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_capri_eval.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_clust_fcc.py TestClustFCC.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_clust_fcc.py TestClustFCC.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_clust_fcc.py TestClustFCC.test_clust_fcc 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_clust_fcc.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_common.py TestCreateCfg.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_common.py TestCreateCfg.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_common.py TestCreateCfg.test_create_cfg_step 8 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_common.py TestCreateCfg.test_create_cfg_run 8 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_common.py (no function) 8 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_contact_map.py TestContactMap.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_contact_map.py TestContactMap.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_contact_map.py TestContactMap.test_contact_map 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_contact_map.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_em_ref.py TestEMRef.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_em_ref.py TestEMRef.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_em_ref.py TestEMRef.test_em_ref 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_em_ref.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_flex_ref.py TestFlexRef.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_flex_ref.py TestFlexRef.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_flex_ref.py TestFlexRef.test_flex_ref 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_flex_ref.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_extend.py TestHaddock3Extend.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_extend.py TestHaddock3Extend.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_extend.py TestHaddock3Extend.test_haddock3_extend 2 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_extend.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_run.py TestHaddock3Run.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_run.py TestHaddock3Run.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_run.py TestHaddock3Run.test_haddock3_run 2 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_haddock3_run.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_rigid_body.py TestRigidBody.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_rigid_body.py TestRigidBody.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_rigid_body.py TestRigidBody.test_rigid_body 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_rigid_body.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top.py TestSeleTop.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top.py TestSeleTop.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top.py TestSeleTop.test_sele_top 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top_clusts.py TestSeleTopClusts.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top_clusts.py TestSeleTopClusts.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top_clusts.py TestSeleTopClusts.test_sele_top_clusts 3 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_sele_top_clusts.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_topology.py TestTopology.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_topology.py TestTopology.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_topology.py TestTopology.test_topology 4 0 0 100%
biobb_haddock/test/unitests/test_haddock/test_topology.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_accessibility.py TestHaddockAccessibility.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_accessibility.py TestHaddockAccessibility.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_accessibility.py TestHaddockAccessibility.test_capri_eval 4 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_accessibility.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_actpass_to_ambig.py TestHaddockActpassToAmbig.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_actpass_to_ambig.py TestHaddockActpassToAmbig.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_actpass_to_ambig.py TestHaddockActpassToAmbig.test_haddock3_actpass_to_ambig 3 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_actpass_to_ambig.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_passive_from_active.py TestHaddockPassiveFromActive.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_passive_from_active.py TestHaddockPassiveFromActive.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_passive_from_active.py TestHaddockPassiveFromActive.test_haddock3_passive_from_active 3 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_passive_from_active.py (no function) 6 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_restrain_bodies.py TestHaddockRestrainBodies.setup_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_restrain_bodies.py TestHaddockRestrainBodies.teardown_class 1 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_restrain_bodies.py TestHaddockRestrainBodies.test_capri_eval 3 0 0 100%
biobb_haddock/test/unitests/test_haddock_restraints/test_haddock3_restrain_bodies.py (no function) 6 0 0 100%
Total   899 106 0 88%

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