Coverage report: 49%

Files Functions Classes

coverage.py v7.13.2, created at 2026-02-02 16:33 +0000

File   statements missing excluded   coverage
biobb_pytorch / __init__.py   4 0 0   100%
biobb_pytorch / mdae / __init__.py   11 0 0   100%
biobb_pytorch / mdae / build_model.py   129 15 0   88%
biobb_pytorch / mdae / common.py   55 55 0   0%
biobb_pytorch / mdae / data / __init__.py   0 0 0   100%
biobb_pytorch / mdae / data / dataset.py   0 0 0   100%
biobb_pytorch / mdae / decode_model.py   64 2 0   97%
biobb_pytorch / mdae / encode_model.py   65 2 0   97%
biobb_pytorch / mdae / evaluate_model.py   94 16 0   83%
biobb_pytorch / mdae / explainability / LRP.py   91 10 0   89%
biobb_pytorch / mdae / explainability / __init__.py   2 0 0   100%
biobb_pytorch / mdae / explainability / layerwise_relevance_prop.py   162 103 0   36%
biobb_pytorch / mdae / explainability / sensitivity_analysis.py   7 0 0   100%
biobb_pytorch / mdae / feat2traj.py   76 22 0   71%
biobb_pytorch / mdae / featurization / __init__.py   0 0 0   100%
biobb_pytorch / mdae / featurization / featurizer.py   190 88 0   54%
biobb_pytorch / mdae / featurization / normalization.py   95 31 0   67%
biobb_pytorch / mdae / featurization / plumed_feat.py   88 88 0   0%
biobb_pytorch / mdae / featurization / topology_selector.py   105 56 0   47%
biobb_pytorch / mdae / loss / __init__.py   10 0 0   100%
biobb_pytorch / mdae / loss / autocorrelation.py   17 1 0   94%
biobb_pytorch / mdae / loss / committor_loss.py   175 154 0   12%
biobb_pytorch / mdae / loss / eigvals.py   36 14 0   61%
biobb_pytorch / mdae / loss / elbo.py   61 31 0   49%
biobb_pytorch / mdae / loss / fisher.py   27 2 0   93%
biobb_pytorch / mdae / loss / ib_loss.py   26 1 0   96%
biobb_pytorch / mdae / loss / mse.py   18 0 0   100%
biobb_pytorch / mdae / loss / physics_loss.py   36 28 0   22%
biobb_pytorch / mdae / loss / tda_loss.py   45 37 0   18%
biobb_pytorch / mdae / loss / utils / __init__.py   0 0 0   100%
biobb_pytorch / mdae / loss / utils / openmm_thread.py   315 315 0   0%
biobb_pytorch / mdae / loss / utils / torch_protein_energy.py   209 191 0   9%
biobb_pytorch / mdae / loss / utils / torch_protein_energy_utils.py   756 737 0   3%
biobb_pytorch / mdae / make_plumed.py   217 68 0   69%
biobb_pytorch / mdae / mdfeaturizer.py   106 10 0   91%
biobb_pytorch / mdae / models / __init__.py   6 0 0   100%
biobb_pytorch / mdae / models / ae.py   68 10 0   85%
biobb_pytorch / mdae / models / gmvae.py   174 128 0   26%
biobb_pytorch / mdae / models / gnnae.py   0 0 0   100%
biobb_pytorch / mdae / models / molearn.py   179 144 0   20%
biobb_pytorch / mdae / models / nn / __init__.py   0 0 0   100%
biobb_pytorch / mdae / models / nn / feedforward.py   31 5 0   84%
biobb_pytorch / mdae / models / nn / utils.py   52 32 0   38%
biobb_pytorch / mdae / models / spib.py   175 106 0   39%
biobb_pytorch / mdae / models / vae.py   77 32 0   58%
biobb_pytorch / mdae / plots.py   105 7 0   93%
biobb_pytorch / mdae / train_model.py   120 20 0   83%
biobb_pytorch / mdae / utils / __init__.py   0 0 0   100%
biobb_pytorch / mdae / utils / log_utils.py   11 4 0   64%
biobb_pytorch / mdae / utils / model_utils.py   9 0 0   100%
biobb_pytorch / test / __init__.py   0 0 0   100%
biobb_pytorch / test / unitests / test_mdae / test_all_models.py   123 4 0   97%
biobb_pytorch / test / unitests / test_mdae / test_build_model.py   45 1 0   98%
biobb_pytorch / test / unitests / test_mdae / test_common.py   0 0 0   100%
biobb_pytorch / test / unitests / test_mdae / test_decode_model.py   17 3 0   82%
biobb_pytorch / test / unitests / test_mdae / test_encode_model.py   17 3 0   82%
biobb_pytorch / test / unitests / test_mdae / test_evaluate_model.py   18 4 0   78%
biobb_pytorch / test / unitests / test_mdae / test_feat2traj.py   20 2 0   90%
biobb_pytorch / test / unitests / test_mdae / test_loss_functions.py   252 10 0   96%
biobb_pytorch / test / unitests / test_mdae / test_lrp.py   18 3 0   83%
biobb_pytorch / test / unitests / test_mdae / test_make_plumed.py   19 1 0   95%
biobb_pytorch / test / unitests / test_mdae / test_mdfeaturizer.py   23 0 0   100%
biobb_pytorch / test / unitests / test_mdae / test_plots.py   135 0 0   100%
biobb_pytorch / test / unitests / test_mdae / test_sensitivity_analysis.py   39 0 0   100%
biobb_pytorch / test / unitests / test_mdae / test_specialized_models.py   85 8 0   91%
biobb_pytorch / test / unitests / test_mdae / test_train_model.py   23 3 0   87%
Total   5133 2607 0   49%

No items found using the specified filter.