Coverage report: 60%

Files Functions Classes

coverage.py v7.8.2, created at 2025-06-06 07:49 +0000

File class statements missing excluded coverage
biobb_amber/__init__.py (no class) 4 0 0 100%
biobb_amber/ambpdb/__init__.py (no class) 3 0 0 100%
biobb_amber/ambpdb/amber_to_pdb.py AmberToPDB 21 1 0 95%
biobb_amber/ambpdb/amber_to_pdb.py (no class) 26 11 0 58%
biobb_amber/ambpdb/common.py (no class) 27 10 0 63%
biobb_amber/cphstats/__init__.py (no class) 4 0 0 100%
biobb_amber/cphstats/cestats_run.py CestatsRun 79 23 0 71%
biobb_amber/cphstats/cestats_run.py (no class) 31 16 0 48%
biobb_amber/cphstats/common.py (no class) 27 9 0 67%
biobb_amber/cphstats/cphstats_run.py CphstatsRun 79 23 0 71%
biobb_amber/cphstats/cphstats_run.py (no class) 31 16 0 48%
biobb_amber/cpptraj/__init__.py (no class) 3 0 0 100%
biobb_amber/cpptraj/common.py (no class) 27 10 0 63%
biobb_amber/cpptraj/cpptraj_randomize_ions.py CpptrajRandomizeIons 40 3 0 92%
biobb_amber/cpptraj/cpptraj_randomize_ions.py (no class) 29 12 0 59%
biobb_amber/leap/__init__.py (no class) 6 0 0 100%
biobb_amber/leap/common.py (no class) 37 20 0 46%
biobb_amber/leap/leap_add_ions.py LeapAddIons 197 88 0 55%
biobb_amber/leap/leap_add_ions.py (no class) 39 17 0 56%
biobb_amber/leap/leap_build_linear_structure.py LeapBuildLinearStructure 68 21 0 69%
biobb_amber/leap/leap_build_linear_structure.py (no class) 28 9 0 68%
biobb_amber/leap/leap_gen_top.py LeapGenTop 101 41 0 59%
biobb_amber/leap/leap_gen_top.py (no class) 35 17 0 51%
biobb_amber/leap/leap_solvate.py LeapSolvate 145 50 0 66%
biobb_amber/leap/leap_solvate.py (no class) 36 17 0 53%
biobb_amber/nab/__init__.py (no class) 3 0 0 100%
biobb_amber/nab/common.py (no class) 27 22 0 19%
biobb_amber/nab/nab_build_dna_structure.py NabBuildDNAStructure 43 43 0 0%
biobb_amber/nab/nab_build_dna_structure.py (no class) 26 10 0 62%
biobb_amber/parmed/__init__.py (no class) 4 0 0 100%
biobb_amber/parmed/common.py (no class) 27 9 0 67%
biobb_amber/parmed/parmed_cpinutil.py ParmedCpinUtil 40 3 0 92%
biobb_amber/parmed/parmed_cpinutil.py (no class) 27 11 0 59%
biobb_amber/parmed/parmed_hmassrepartition.py ParmedHMassRepartition 32 4 0 88%
biobb_amber/parmed/parmed_hmassrepartition.py (no class) 27 10 0 63%
biobb_amber/pdb4amber/__init__.py (no class) 3 0 0 100%
biobb_amber/pdb4amber/common.py (no class) 27 10 0 63%
biobb_amber/pdb4amber/pdb4amber_run.py Pdb4amberRun 35 5 0 86%
biobb_amber/pdb4amber/pdb4amber_run.py (no class) 26 10 0 62%
biobb_amber/pmemd/__init__.py (no class) 3 0 0 100%
biobb_amber/pmemd/common.py (no class) 27 22 0 19%
biobb_amber/pmemd/pmemd_mdrun.py PmemdMDRun 161 161 0 0%
biobb_amber/pmemd/pmemd_mdrun.py (no class) 38 20 0 47%
biobb_amber/process/__init__.py (no class) 4 0 0 100%
biobb_amber/process/common.py (no class) 37 15 0 59%
biobb_amber/process/process_mdout.py ProcessMDOut 53 7 0 87%
biobb_amber/process/process_mdout.py (no class) 28 10 0 64%
biobb_amber/process/process_minout.py ProcessMinOut 53 26 0 51%
biobb_amber/process/process_minout.py (no class) 28 10 0 64%
biobb_amber/sander/__init__.py (no class) 3 0 0 100%
biobb_amber/sander/common.py (no class) 28 9 0 68%
biobb_amber/sander/sander_mdrun.py SanderMDRun 172 86 0 50%
biobb_amber/sander/sander_mdrun.py (no class) 39 19 0 51%
biobb_amber/test/unitests/test_ambpdb/test_ambpdb_amber_to_pdb.py TestAmberToPDB 6 0 0 100%
biobb_amber/test/unitests/test_ambpdb/test_ambpdb_amber_to_pdb.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_cphstats/test_cestats_run.py TestCestatsRun 6 0 0 100%
biobb_amber/test/unitests/test_cphstats/test_cestats_run.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_cphstats/test_cphstats_run.py TestCphstatsRun 6 0 0 100%
biobb_amber/test/unitests/test_cphstats/test_cphstats_run.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py TestCpptrajRandomizeIons 6 0 0 100%
biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_add_ions.py TestLeapAddIons 7 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_add_ions.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py TestLeapBuildLinearStructure 6 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_gen_top.py TestLeapGenTop 10 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_gen_top.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_solvate.py TestLeapSolvate 9 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_solvate.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py TestParmedCpinUtil 6 0 0 100%
biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py TestParmedHMassRepartition 6 0 0 100%
biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py TestPdb4amberRun 6 0 0 100%
biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_process/test_process_mdout.py TestProcessMDOut 6 0 0 100%
biobb_amber/test/unitests/test_process/test_process_mdout.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_process/test_process_minout.py TestProcessMinOut 6 0 0 100%
biobb_amber/test/unitests/test_process/test_process_minout.py (no class) 6 0 0 100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py TestSanderMDRun 6 0 0 100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py TestSanderMDRunDirectMDin 6 0 0 100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py (no class) 10 0 0 100%
Total   2330 936 0 60%

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