Coverage report:
67%
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Files
Functions
Classes
coverage.py v7.5.1
, created at 2024-05-07 08:11 +0000
File
class
statements
missing
excluded
coverage
biobb_amber/__init__.py
(no class)
3
0
0
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biobb_amber/ambpdb/__init__.py
(no class)
2
0
0
100%
biobb_amber/ambpdb/amber_to_pdb.py
AmberToPDB
22
1
0
95%
biobb_amber/ambpdb/amber_to_pdb.py
(no class)
15
1
0
93%
biobb_amber/ambpdb/common.py
(no class)
5
0
0
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biobb_amber/cphstats/__init__.py
(no class)
2
0
0
100%
biobb_amber/cphstats/cestats_run.py
CestatsRun
80
23
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71%
biobb_amber/cphstats/cestats_run.py
(no class)
15
1
0
93%
biobb_amber/cphstats/common.py
(no class)
5
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0
100%
biobb_amber/cphstats/cphstats_run.py
CphstatsRun
80
23
0
71%
biobb_amber/cphstats/cphstats_run.py
(no class)
15
1
0
93%
biobb_amber/cpptraj/__init__.py
(no class)
2
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biobb_amber/cpptraj/common.py
(no class)
5
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biobb_amber/cpptraj/cpptraj_randomize_ions.py
CpptrajRandomizeIons
40
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92%
biobb_amber/cpptraj/cpptraj_randomize_ions.py
(no class)
17
1
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94%
biobb_amber/leap/__init__.py
(no class)
2
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biobb_amber/leap/common.py
(no class)
5
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biobb_amber/leap/leap_add_ions.py
LeapAddIons
166
67
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60%
biobb_amber/leap/leap_add_ions.py
(no class)
21
1
0
95%
biobb_amber/leap/leap_build_linear_structure.py
LeapBuildLinearStructure
37
4
0
89%
biobb_amber/leap/leap_build_linear_structure.py
(no class)
17
1
0
94%
biobb_amber/leap/leap_gen_top.py
LeapGenTop
70
20
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71%
biobb_amber/leap/leap_gen_top.py
(no class)
17
1
0
94%
biobb_amber/leap/leap_solvate.py
LeapSolvate
114
29
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75%
biobb_amber/leap/leap_solvate.py
(no class)
18
1
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94%
biobb_amber/nab/__init__.py
(no class)
2
2
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0%
biobb_amber/nab/common.py
(no class)
5
5
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biobb_amber/nab/nab_build_dna_structure.py
NabBuildDNAStructure
43
43
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biobb_amber/nab/nab_build_dna_structure.py
(no class)
17
17
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biobb_amber/parmed/__init__.py
(no class)
2
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biobb_amber/parmed/common.py
(no class)
5
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biobb_amber/parmed/parmed_cpinutil.py
ParmedCpinUtil
40
3
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92%
biobb_amber/parmed/parmed_cpinutil.py
(no class)
16
1
0
94%
biobb_amber/parmed/parmed_hmassrepartition.py
ParmedHMassRepartition
32
4
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88%
biobb_amber/parmed/parmed_hmassrepartition.py
(no class)
17
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94%
biobb_amber/pdb4amber/__init__.py
(no class)
2
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biobb_amber/pdb4amber/common.py
(no class)
5
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biobb_amber/pdb4amber/pdb4amber_run.py
Pdb4amberRun
32
4
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biobb_amber/pdb4amber/pdb4amber_run.py
(no class)
16
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94%
biobb_amber/pmemd/__init__.py
(no class)
2
2
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0%
biobb_amber/pmemd/common.py
(no class)
5
5
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biobb_amber/pmemd/pmemd_mdrun.py
PmemdMDRun
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161
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biobb_amber/pmemd/pmemd_mdrun.py
(no class)
19
19
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biobb_amber/process/__init__.py
(no class)
2
0
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biobb_amber/process/common.py
(no class)
5
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100%
biobb_amber/process/process_mdout.py
ProcessMDOut
53
7
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biobb_amber/process/process_mdout.py
(no class)
18
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biobb_amber/process/process_minout.py
ProcessMinOut
53
26
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biobb_amber/process/process_minout.py
(no class)
18
1
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94%
biobb_amber/sander/__init__.py
(no class)
2
0
0
100%
biobb_amber/sander/common.py
(no class)
6
0
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100%
biobb_amber/sander/sander_mdrun.py
SanderMDRun
171
86
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biobb_amber/sander/sander_mdrun.py
(no class)
20
1
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biobb_amber/test/unitests/test_ambpdb/test_ambpdb_amber_to_pdb.py
TestAmberToPDB
6
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biobb_amber/test/unitests/test_ambpdb/test_ambpdb_amber_to_pdb.py
(no class)
6
0
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100%
biobb_amber/test/unitests/test_cphstats/test_cestats_run.py
TestCestatsRun
6
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100%
biobb_amber/test/unitests/test_cphstats/test_cestats_run.py
(no class)
6
0
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biobb_amber/test/unitests/test_cphstats/test_cphstats_run.py
TestCphstatsRun
6
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biobb_amber/test/unitests/test_cphstats/test_cphstats_run.py
(no class)
6
0
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biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py
TestCpptrajRandomizeIons
6
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biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py
(no class)
6
0
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100%
biobb_amber/test/unitests/test_leap/test_leap_add_ions.py
TestLeapAddIons
7
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biobb_amber/test/unitests/test_leap/test_leap_add_ions.py
(no class)
6
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biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py
TestLeapBuildLinearStructure
6
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biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py
(no class)
6
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100%
biobb_amber/test/unitests/test_leap/test_leap_gen_top.py
TestLeapGenTop
10
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biobb_amber/test/unitests/test_leap/test_leap_gen_top.py
(no class)
6
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100%
biobb_amber/test/unitests/test_leap/test_leap_solvate.py
TestLeapSolvate
9
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biobb_amber/test/unitests/test_leap/test_leap_solvate.py
(no class)
6
0
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100%
biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py
TestParmedCpinUtil
6
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biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py
(no class)
6
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biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py
TestParmedHMassRepartition
6
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biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py
(no class)
6
0
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biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py
TestPdb4amberRun
6
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biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py
(no class)
6
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biobb_amber/test/unitests/test_process/test_process_mdout.py
TestProcessMDOut
6
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biobb_amber/test/unitests/test_process/test_process_mdout.py
(no class)
6
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100%
biobb_amber/test/unitests/test_process/test_process_minout.py
TestProcessMinOut
6
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biobb_amber/test/unitests/test_process/test_process_minout.py
(no class)
6
0
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100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py
TestSanderMDRun
6
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100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py
TestSanderMDRunDirectMDin
6
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biobb_amber/test/unitests/test_sander/test_sander_mdrun.py
(no class)
10
0
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Total
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568
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