Coverage report: 67%

Files Functions Classes

coverage.py v7.16.2, created at 2026-10-06 14:11 +0000

File class   statements missing excluded   coverage
biobb_amber/__init__.py (no class)   4 0 0   100%
biobb_amber/ambpdb/__init__.py (no class)   3 0 0   100%
biobb_amber/ambpdb/amber_to_pdb.py AmberToPDB   21 1 0   95%
biobb_amber/ambpdb/amber_to_pdb.py (no class)   15 1 0   93%
biobb_amber/ambpdb/common.py (no class)   27 10 0   63%
biobb_amber/cphstats/__init__.py (no class)   4 0 0   100%
biobb_amber/cphstats/cestats_run.py CestatsRun   79 23 0   71%
biobb_amber/cphstats/cestats_run.py (no class)   15 1 0   93%
biobb_amber/cphstats/common.py (no class)   27 9 0   67%
biobb_amber/cphstats/cphstats_run.py CphstatsRun   79 23 0   71%
biobb_amber/cphstats/cphstats_run.py (no class)   15 1 0   93%
biobb_amber/cpptraj/__init__.py (no class)   3 0 0   100%
biobb_amber/cpptraj/common.py (no class)   27 10 0   63%
biobb_amber/cpptraj/cpptraj_randomize_ions.py CpptrajRandomizeIons   42 4 0   90%
biobb_amber/cpptraj/cpptraj_randomize_ions.py (no class)   17 1 0   94%
biobb_amber/leap/__init__.py (no class)   6 0 0   100%
biobb_amber/leap/common.py (no class)   37 20 0   46%
biobb_amber/leap/leap_add_ions.py LeapAddIons   196 86 0   56%
biobb_amber/leap/leap_add_ions.py (no class)   23 1 0   96%
biobb_amber/leap/leap_build_linear_structure.py LeapBuildLinearStructure   72 23 0   68%
biobb_amber/leap/leap_build_linear_structure.py (no class)   19 1 0   95%
biobb_amber/leap/leap_gen_top.py LeapGenTop   96 36 0   62%
biobb_amber/leap/leap_gen_top.py (no class)   19 1 0   95%
biobb_amber/leap/leap_solvate.py LeapSolvate   140 45 0   68%
biobb_amber/leap/leap_solvate.py (no class)   20 1 0   95%
biobb_amber/parmed/__init__.py (no class)   4 0 0   100%
biobb_amber/parmed/common.py (no class)   27 9 0   67%
biobb_amber/parmed/parmed_cpinutil.py ParmedCpinUtil   40 3 0   92%
biobb_amber/parmed/parmed_cpinutil.py (no class)   16 1 0   94%
biobb_amber/parmed/parmed_hmassrepartition.py ParmedHMassRepartition   32 4 0   88%
biobb_amber/parmed/parmed_hmassrepartition.py (no class)   17 1 0   94%
biobb_amber/pdb4amber/__init__.py (no class)   3 0 0   100%
biobb_amber/pdb4amber/common.py (no class)   27 10 0   63%
biobb_amber/pdb4amber/pdb4amber_run.py Pdb4amberRun   36 5 0   86%
biobb_amber/pdb4amber/pdb4amber_run.py (no class)   16 1 0   94%
biobb_amber/pmemd/__init__.py (no class)   3 0 0   100%
biobb_amber/pmemd/common.py (no class)   27 22 0   19%
biobb_amber/pmemd/pmemd_mdrun.py PmemdMDRun   161 161 0   0%
biobb_amber/pmemd/pmemd_mdrun.py (no class)   19 2 0   89%
biobb_amber/process/__init__.py (no class)   4 0 0   100%
biobb_amber/process/common.py (no class)   37 15 0   59%
biobb_amber/process/process_mdout.py ProcessMDOut   57 10 0   82%
biobb_amber/process/process_mdout.py (no class)   18 1 0   94%
biobb_amber/process/process_minout.py ProcessMinOut   57 29 0   49%
biobb_amber/process/process_minout.py (no class)   18 1 0   94%
biobb_amber/sander/__init__.py (no class)   3 0 0   100%
biobb_amber/sander/common.py (no class)   28 9 0   68%
biobb_amber/sander/sander_mdrun.py SanderMDRun   171 86 0   50%
biobb_amber/sander/sander_mdrun.py (no class)   20 1 0   95%
biobb_amber/test/unitests/test_ambpdb/test_ambpdb_amber_to_pdb.py TestAmberToPDB   6 0 0   100%
biobb_amber/test/unitests/test_ambpdb/test_ambpdb_amber_to_pdb.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_cphstats/test_cestats_run.py TestCestatsRun   6 0 0   100%
biobb_amber/test/unitests/test_cphstats/test_cestats_run.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_cphstats/test_cphstats_run.py TestCphstatsRun   6 0 0   100%
biobb_amber/test/unitests/test_cphstats/test_cphstats_run.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py TestCpptrajRandomizeIons   6 0 0   100%
biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_add_ions.py TestLeapAddIons   7 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_add_ions.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py TestLeapBuildLinearStructure   6 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_gen_top.py TestLeapGenTop   10 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_gen_top.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_solvate.py TestLeapSolvate   7 0 0   100%
biobb_amber/test/unitests/test_leap/test_leap_solvate.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py TestParmedCpinUtil   6 0 0   100%
biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py TestParmedHMassRepartition   6 0 0   100%
biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py TestPdb4amberRun   6 0 0   100%
biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_process/test_process_mdout.py TestProcessMDOut   6 0 0   100%
biobb_amber/test/unitests/test_process/test_process_mdout.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_process/test_process_minout.py TestProcessMinOut   6 0 0   100%
biobb_amber/test/unitests/test_process/test_process_minout.py (no class)   6 0 0   100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py TestSanderMDRun   6 0 0   100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py TestSanderMDRunDirectMDin   6 0 0   100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py (no class)   10 0 0   100%
Total     2031 669 0   67%

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