Coverage report: 60%

Files Functions Classes

coverage.py v7.8.2, created at 2025-06-06 07:49 +0000

File statements missing excluded coverage
biobb_amber/__init__.py 4 0 0 100%
biobb_amber/ambpdb/__init__.py 3 0 0 100%
biobb_amber/ambpdb/amber_to_pdb.py 47 12 0 74%
biobb_amber/ambpdb/common.py 27 10 0 63%
biobb_amber/cphstats/__init__.py 4 0 0 100%
biobb_amber/cphstats/cestats_run.py 110 39 0 65%
biobb_amber/cphstats/common.py 27 9 0 67%
biobb_amber/cphstats/cphstats_run.py 110 39 0 65%
biobb_amber/cpptraj/__init__.py 3 0 0 100%
biobb_amber/cpptraj/common.py 27 10 0 63%
biobb_amber/cpptraj/cpptraj_randomize_ions.py 69 15 0 78%
biobb_amber/leap/__init__.py 6 0 0 100%
biobb_amber/leap/common.py 37 20 0 46%
biobb_amber/leap/leap_add_ions.py 236 105 0 56%
biobb_amber/leap/leap_build_linear_structure.py 96 30 0 69%
biobb_amber/leap/leap_gen_top.py 136 58 0 57%
biobb_amber/leap/leap_solvate.py 181 67 0 63%
biobb_amber/nab/__init__.py 3 0 0 100%
biobb_amber/nab/common.py 27 22 0 19%
biobb_amber/nab/nab_build_dna_structure.py 69 53 0 23%
biobb_amber/parmed/__init__.py 4 0 0 100%
biobb_amber/parmed/common.py 27 9 0 67%
biobb_amber/parmed/parmed_cpinutil.py 67 14 0 79%
biobb_amber/parmed/parmed_hmassrepartition.py 59 14 0 76%
biobb_amber/pdb4amber/__init__.py 3 0 0 100%
biobb_amber/pdb4amber/common.py 27 10 0 63%
biobb_amber/pdb4amber/pdb4amber_run.py 61 15 0 75%
biobb_amber/pmemd/__init__.py 3 0 0 100%
biobb_amber/pmemd/common.py 27 22 0 19%
biobb_amber/pmemd/pmemd_mdrun.py 199 181 0 9%
biobb_amber/process/__init__.py 4 0 0 100%
biobb_amber/process/common.py 37 15 0 59%
biobb_amber/process/process_mdout.py 81 17 0 79%
biobb_amber/process/process_minout.py 81 36 0 56%
biobb_amber/sander/__init__.py 3 0 0 100%
biobb_amber/sander/common.py 28 9 0 68%
biobb_amber/sander/sander_mdrun.py 211 105 0 50%
biobb_amber/test/unitests/test_ambpdb/test_ambpdb_amber_to_pdb.py 12 0 0 100%
biobb_amber/test/unitests/test_cphstats/test_cestats_run.py 12 0 0 100%
biobb_amber/test/unitests/test_cphstats/test_cphstats_run.py 12 0 0 100%
biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py 12 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_add_ions.py 13 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py 12 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_gen_top.py 16 0 0 100%
biobb_amber/test/unitests/test_leap/test_leap_solvate.py 15 0 0 100%
biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py 12 0 0 100%
biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py 12 0 0 100%
biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py 12 0 0 100%
biobb_amber/test/unitests/test_process/test_process_mdout.py 12 0 0 100%
biobb_amber/test/unitests/test_process/test_process_minout.py 12 0 0 100%
biobb_amber/test/unitests/test_sander/test_sander_mdrun.py 22 0 0 100%
Total 2330 936 0 60%

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