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cpptraj_randomize_ions |
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LeapAddIons.check_data_params |
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LeapAddIons.launch |
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LeapBuildLinearStructure.__init__ |
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LeapBuildLinearStructure.launch |
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leap_build_linear_structure |
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main |
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LeapGenTop.__init__ |
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LeapSolvate.__init__ |
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LeapSolvate.launch |
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NabBuildDNAStructure.__init__ |
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nab_build_dna_structure |
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main |
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ParmedCpinUtil.check_data_params |
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ParmedCpinUtil.launch |
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ParmedHMassRepartition.__init__ |
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ParmedHMassRepartition.check_data_params |
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ParmedHMassRepartition.launch |
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parmed_hmassrepartition |
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Pdb4amberRun.__init__ |
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Pdb4amberRun.check_data_params |
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Pdb4amberRun.launch |
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pdb4amber_run |
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main |
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check_output_path |
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is_valid_file |
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PmemdMDRun.__init__ |
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PmemdMDRun.check_data_params |
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PmemdMDRun.create_mdin |
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PmemdMDRun.launch |
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pmemd_mdrun |
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ProcessMDOut.__init__ |
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ProcessMDOut.check_data_params |
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ProcessMDOut.launch |
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process_mdout |
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ProcessMinOut.__init__ |
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ProcessMinOut.check_data_params |
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ProcessMinOut.launch |
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process_minout |
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check_output_path |
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SanderMDRun.__init__ |
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SanderMDRun.check_data_params |
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SanderMDRun.create_mdin |
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SanderMDRun.launch |
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sander_mdrun |
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main |
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TestAmberToPDB.setup_class |
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TestAmberToPDB.teardown_class |
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TestAmberToPDB.test_amber_to_pdb |
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TestCestatsRun.setup_class |
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TestCestatsRun.teardown_class |
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TestCestatsRun.test_cestats_run |
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TestCphstatsRun.setup_class |
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TestCphstatsRun.teardown_class |
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TestCphstatsRun.test_cphstats_run |
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(no function) |
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TestCpptrajRandomizeIons.setup_class |
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0 |
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TestCpptrajRandomizeIons.teardown_class |
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0 |
0 |
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| biobb_amber/test/unitests/test_cpptraj/test_cpptraj_randomize_ions.py |
TestCpptrajRandomizeIons.test_cpptraj_randomize_ions |
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0 |
0 |
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(no function) |
6 |
0 |
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TestLeapAddIons.setup_class |
1 |
0 |
0 |
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TestLeapAddIons.teardown_class |
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0 |
0 |
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TestLeapAddIons.test_leap_add_ions |
4 |
0 |
0 |
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| biobb_amber/test/unitests/test_leap/test_leap_add_ions.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py |
TestLeapBuildLinearStructure.setup_class |
1 |
0 |
0 |
100% |
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TestLeapBuildLinearStructure.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py |
TestLeapBuildLinearStructure.test_leap_build_linear_structure |
3 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_build_linear_structure.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_gen_top.py |
TestLeapGenTop.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_gen_top.py |
TestLeapGenTop.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_gen_top.py |
TestLeapGenTop.test_leap_gen_top |
7 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_gen_top.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_solvate.py |
TestLeapSolvate.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_solvate.py |
TestLeapSolvate.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_solvate.py |
TestLeapSolvate.test_leap_solvate |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_leap/test_leap_solvate.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py |
TestParmedCpinUtil.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py |
TestParmedCpinUtil.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py |
TestParmedCpinUtil.test_parmed_cpinutil |
3 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_cpinutil.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py |
TestParmedHMassRepartition.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py |
TestParmedHMassRepartition.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py |
TestParmedHMassRepartition.test_parmed_hmassrepartition |
3 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_parmed/test_parmed_hmassrepartition.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py |
TestPdb4amberRun.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py |
TestPdb4amberRun.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py |
TestPdb4amberRun.test_pdb4amber_run |
3 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_pdb4amber/test_pdb4amber_pdb4amber.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_mdout.py |
TestProcessMDOut.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_mdout.py |
TestProcessMDOut.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_mdout.py |
TestProcessMDOut.test_process_mdout |
3 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_mdout.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_minout.py |
TestProcessMinOut.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_minout.py |
TestProcessMinOut.teardown_class |
2 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_minout.py |
TestProcessMinOut.test_process_minout |
3 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_process/test_process_minout.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_sander/test_sander_mdrun.py |
TestSanderMDRun.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_sander/test_sander_mdrun.py |
TestSanderMDRun.teardown_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_sander/test_sander_mdrun.py |
TestSanderMDRun.test_sander_mdrun |
4 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_sander/test_sander_mdrun.py |
TestSanderMDRunDirectMDin.setup_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_sander/test_sander_mdrun.py |
TestSanderMDRunDirectMDin.teardown_class |
1 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_sander/test_sander_mdrun.py |
TestSanderMDRunDirectMDin.test_sander_mdrun |
4 |
0 |
0 |
100% |
| biobb_amber/test/unitests/test_sander/test_sander_mdrun.py |
(no function) |
10 |
0 |
0 |
100% |