Coverage for biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_structure.py: 100%

1# type: ignore 

2from biobb_common.tools import test_fixtures as fx 

3from biobb_cmip.cmip.cmip_prepare_structure import cmip_prepare_structure 

4 

5 

6# class TestCmipPrepareStructure(): 

7# def setup_class(self): 

8# fx.test_setup(self, 'cmip_prepare_structure') 

9# 

10# def teardown_class(self): 

11# pass 

12# #fx.test_teardown(self) 

13# 

14# def test_prepare_structure(self): 

15# prepare_structure(properties=self.properties, **self.paths) 

16# assert fx.not_empty(self.paths['output_pdb_path']) 

17# assert fx.equal(self.paths['output_pdb_path'], self.paths['ref_output_prepare_structure_pdb_path'], remove_hetatm=False) 

18 

19class TestCmipPrepareStructureTopology(): 

20 def setup_class(self): 

21 fx.test_setup(self, 'cmip_prepare_structure_topology') 

22 

23 def teardown_class(self): 

24 fx.test_teardown(self) 

25 # pass 

26 

27 def test_cmip_prepare_structure_Topology(self): 

28 cmip_prepare_structure(properties=self.properties, **self.paths) 

29 assert fx.not_empty(self.paths['output_cmip_pdb_path']) 

30 assert fx.equal(self.paths['output_cmip_pdb_path'], self.paths['ref_output_prepare_structure_topology_path'], remove_hetatm=False)