Coverage report: 82%

Files Functions Classes

coverage.py v7.12.0, created at 2025-12-03 10:07 +0000

File function   statements missing excluded   coverage
biobb_mem / __init__.py (no function)   6 0 0   100%
biobb_mem / ambertools / __init__.py (no function)   2 0 0   100%
biobb_mem / ambertools / cpptraj_density.py CpptrajDensity.__init__   20 0 0   100%
biobb_mem / ambertools / cpptraj_density.py CpptrajDensity.create_instructions_file   18 5 0   72%
biobb_mem / ambertools / cpptraj_density.py CpptrajDensity.launch   10 1 0   90%
biobb_mem / ambertools / cpptraj_density.py cpptraj_density   1 0 0   100%
biobb_mem / ambertools / cpptraj_density.py (no function)   13 1 0   92%
biobb_mem / fatslim / __init__.py (no function)   2 0 0   100%
biobb_mem / fatslim / common.py set_box   3 0 0   100%
biobb_mem / fatslim / common.py ignore_no_box   6 2 0   67%
biobb_mem / fatslim / common.py move_output_file   7 1 0   86%
biobb_mem / fatslim / common.py (no function)   8 0 0   100%
biobb_mem / fatslim / fatslim_apl.py FatslimAPL.__init__   15 0 0   100%
biobb_mem / fatslim / fatslim_apl.py FatslimAPL.launch   23 3 0   87%
biobb_mem / fatslim / fatslim_apl.py fatslim_apl   1 0 0   100%
biobb_mem / fatslim / fatslim_apl.py (no function)   13 1 0   92%
biobb_mem / fatslim / fatslim_membranes.py FatslimMembranes.__init__   14 0 0   100%
biobb_mem / fatslim / fatslim_membranes.py FatslimMembranes.launch   29 9 0   69%
biobb_mem / fatslim / fatslim_membranes.py fatslim_membranes   1 0 0   100%
biobb_mem / fatslim / fatslim_membranes.py parse_index   12 12 0   0%
biobb_mem / fatslim / fatslim_membranes.py display_fatslim   23 23 0   0%
biobb_mem / fatslim / fatslim_membranes.py (no function)   16 1 0   94%
biobb_mem / gorder / __init__.py (no function)   2 0 0   100%
biobb_mem / gorder / gorder_aa.py GorderAA.__init__   10 0 0   100%
biobb_mem / gorder / gorder_aa.py GorderAA.launch   10 1 0   90%
biobb_mem / gorder / gorder_aa.py gorder_aa   1 0 0   100%
biobb_mem / gorder / gorder_aa.py (no function)   12 1 0   92%
biobb_mem / gorder / gorder_cg.py GorderCG.__init__   9 0 0   100%
biobb_mem / gorder / gorder_cg.py GorderCG.launch   9 1 0   89%
biobb_mem / gorder / gorder_cg.py gorder_cg   1 0 0   100%
biobb_mem / gorder / gorder_cg.py (no function)   12 1 0   92%
biobb_mem / gorder / gorder_ua.py GorderUA.__init__   10 0 0   100%
biobb_mem / gorder / gorder_ua.py GorderUA.launch   9 1 0   89%
biobb_mem / gorder / gorder_ua.py gorder_ua   1 0 0   100%
biobb_mem / gorder / gorder_ua.py (no function)   12 1 0   92%
biobb_mem / lipyphilic_biobb / __init__.py (no function)   2 0 0   100%
biobb_mem / lipyphilic_biobb / common.py set_box   8 8 0   0%
biobb_mem / lipyphilic_biobb / common.py ignore_no_box   6 5 0   17%
biobb_mem / lipyphilic_biobb / common.py (no function)   5 0 0   100%
biobb_mem / lipyphilic_biobb / lpp_assign_leaflets.py LPPAssignLeaflets.__init__   15 0 0   100%
biobb_mem / lipyphilic_biobb / lpp_assign_leaflets.py LPPAssignLeaflets.launch   21 3 0   86%
biobb_mem / lipyphilic_biobb / lpp_assign_leaflets.py lpp_assign_leaflets   1 0 0   100%
biobb_mem / lipyphilic_biobb / lpp_assign_leaflets.py display_nglview   15 15 0   0%
biobb_mem / lipyphilic_biobb / lpp_assign_leaflets.py (no function)   17 1 0   94%
biobb_mem / lipyphilic_biobb / lpp_flip_flop.py LPPFlipFlop.__init__   13 0 0   100%
biobb_mem / lipyphilic_biobb / lpp_flip_flop.py LPPFlipFlop.launch   24 3 0   88%
biobb_mem / lipyphilic_biobb / lpp_flip_flop.py lpp_flip_flop   1 0 0   100%
biobb_mem / lipyphilic_biobb / lpp_flip_flop.py (no function)   16 1 0   94%
biobb_mem / lipyphilic_biobb / lpp_zpositions.py LPPZPositions.__init__   16 0 0   100%
biobb_mem / lipyphilic_biobb / lpp_zpositions.py LPPZPositions.launch   17 1 0   94%
biobb_mem / lipyphilic_biobb / lpp_zpositions.py lpp_zpositions   1 0 0   100%
biobb_mem / lipyphilic_biobb / lpp_zpositions.py frame_df   5 5 0   0%
biobb_mem / lipyphilic_biobb / lpp_zpositions.py (no function)   17 1 0   94%
biobb_mem / mdanalysis_biobb / __init__.py (no function)   2 0 0   100%
biobb_mem / mdanalysis_biobb / mda_hole.py MDAHole.__init__   17 0 0   100%
biobb_mem / mdanalysis_biobb / mda_hole.py MDAHole.launch   23 1 0   96%
biobb_mem / mdanalysis_biobb / mda_hole.py mda_hole   1 0 0   100%
biobb_mem / mdanalysis_biobb / mda_hole.py display_hole   32 32 0   0%
biobb_mem / mdanalysis_biobb / mda_hole.py (no function)   18 1 0   94%
biobb_mem / test / __init__.py (no function)   0 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityDefault.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityDefault.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityDefault.test_cpptraj_density   4 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityMask.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityMask.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityMask.test_cpptraj_density   4 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityComplex.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityComplex.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py TestCpptrajDensityComplex.test_cpptraj_density   4 0 0   100%
biobb_mem / test / unitests / test_ambertools / test_cpptraj_density.py (no function)   14 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_apl.py TestFatslimAPLcDefault.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_apl.py TestFatslimAPLcDefault.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_apl.py TestFatslimAPLcDefault.test_fatslim_apl   4 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_apl.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_membranes.py TestFatslimMembranescDefault.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_membranes.py TestFatslimMembranescDefault.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_membranes.py TestFatslimMembranescDefault.test_fatslim_membranes   4 0 0   100%
biobb_mem / test / unitests / test_fatslim / test_fatslim_membranes.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_aa.py TestGOrderAA.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_aa.py TestGOrderAA.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_aa.py TestGOrderAA.test_gorder_aa   4 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_aa.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_cg.py TestGOrderCG.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_cg.py TestGOrderCG.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_cg.py TestGOrderCG.test_gorder_cg   4 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_cg.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_ua.py TestGOrderUA.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_ua.py TestGOrderUA.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_ua.py TestGOrderUA.test_gorder_ua   4 0 0   100%
biobb_mem / test / unitests / test_gorder / test_gorder_ua.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.test_lipyphilic_leaflets_default   4 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_assign_leaflets.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.test_lipyphilic_leaflets_default   4 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_flip_flop.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_zpositions.py TestLipyphilicPositionsDefault.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_zpositions.py TestLipyphilicPositionsDefault.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_zpositions.py TestLipyphilicPositionsDefault.test_lipyphilic_positons_default   4 0 0   100%
biobb_mem / test / unitests / test_lipyphilic_biobb / test_lpp_zpositions.py (no function)   6 0 0   100%
biobb_mem / test / unitests / test_mdanalysis_biobb / test_mdanalays_biobb.py TestMDAHole.setup_class   1 0 0   100%
biobb_mem / test / unitests / test_mdanalysis_biobb / test_mdanalays_biobb.py TestMDAHole.teardown_class   2 0 0   100%
biobb_mem / test / unitests / test_mdanalysis_biobb / test_mdanalays_biobb.py TestMDAHole.test_mda_hole_default   4 0 0   100%
biobb_mem / test / unitests / test_mdanalysis_biobb / test_mdanalays_biobb.py (no function)   6 0 0   100%
Total     786 142 0   82%

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