Coverage report: 70%

Files Functions Classes

coverage.py v7.6.11, created at 2025-02-10 11:25 +0000

File function statements missing excluded coverage
biobb_mem/__init__.py (no function) 6 0 0 100%
biobb_mem/ambertools/__init__.py (no function) 2 0 0 100%
biobb_mem/ambertools/cpptraj_density.py CpptrajDensity.__init__ 20 0 0 100%
biobb_mem/ambertools/cpptraj_density.py CpptrajDensity.create_instructions_file 16 4 0 75%
biobb_mem/ambertools/cpptraj_density.py CpptrajDensity.launch 11 1 0 91%
biobb_mem/ambertools/cpptraj_density.py cpptraj_density 1 0 0 100%
biobb_mem/ambertools/cpptraj_density.py main 11 11 0 0%
biobb_mem/ambertools/cpptraj_density.py (no function) 15 1 0 93%
biobb_mem/fatslim/__init__.py (no function) 2 0 0 100%
biobb_mem/fatslim/common.py calculate_box 4 0 0 100%
biobb_mem/fatslim/common.py (no function) 2 0 0 100%
biobb_mem/fatslim/fatslim_apl.py FatslimAPL.__init__ 15 0 0 100%
biobb_mem/fatslim/fatslim_apl.py FatslimAPL.launch 29 5 0 83%
biobb_mem/fatslim/fatslim_apl.py fatslim_apl 1 0 0 100%
biobb_mem/fatslim/fatslim_apl.py main 10 10 0 0%
biobb_mem/fatslim/fatslim_apl.py (no function) 17 1 0 94%
biobb_mem/fatslim/fatslim_membranes.py FatslimMembranes.__init__ 14 0 0 100%
biobb_mem/fatslim/fatslim_membranes.py FatslimMembranes.launch 35 11 0 69%
biobb_mem/fatslim/fatslim_membranes.py fatslim_membranes 1 0 0 100%
biobb_mem/fatslim/fatslim_membranes.py main 11 11 0 0%
biobb_mem/fatslim/fatslim_membranes.py parse_index 12 12 0 0%
biobb_mem/fatslim/fatslim_membranes.py display_fatslim 23 23 0 0%
biobb_mem/fatslim/fatslim_membranes.py (no function) 20 1 0 95%
biobb_mem/gromacs/__init__.py (no function) 2 0 0 100%
biobb_mem/gromacs/gmx_order.py GMXOrder.__init__ 9 0 0 100%
biobb_mem/gromacs/gmx_order.py GMXOrder.launch 13 2 0 85%
biobb_mem/gromacs/gmx_order.py gmx_order 1 0 0 100%
biobb_mem/gromacs/gmx_order.py main 12 12 0 0%
biobb_mem/gromacs/gmx_order.py (no function) 13 1 0 92%
biobb_mem/lipyphilic_biobb/__init__.py (no function) 2 0 0 100%
biobb_mem/lipyphilic_biobb/common.py calculate_box 9 9 0 0%
biobb_mem/lipyphilic_biobb/common.py (no function) 3 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py LPPAssignLeaflets.__init__ 15 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py LPPAssignLeaflets.launch 25 6 0 76%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py lpp_assign_leaflets 1 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py main 10 10 0 0%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py display_nglview 15 15 0 0%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py (no function) 18 1 0 94%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py LPPFlipFlop.__init__ 13 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py LPPFlipFlop.launch 28 6 0 79%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py lpp_flip_flop 1 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py main 11 11 0 0%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py (no function) 17 1 0 94%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py LPPZPositions.__init__ 16 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py LPPZPositions.launch 21 4 0 81%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py lpp_zpositions 1 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py main 10 10 0 0%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py frame_df 5 5 0 0%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py (no function) 18 1 0 94%
biobb_mem/mdanalysis_biobb/__init__.py (no function) 2 0 0 100%
biobb_mem/mdanalysis_biobb/mda_hole.py MDAHole.__init__ 17 0 0 100%
biobb_mem/mdanalysis_biobb/mda_hole.py MDAHole.launch 24 1 0 96%
biobb_mem/mdanalysis_biobb/mda_hole.py mda_hole 1 0 0 100%
biobb_mem/mdanalysis_biobb/mda_hole.py main 11 11 0 0%
biobb_mem/mdanalysis_biobb/mda_hole.py display_hole 32 32 0 0%
biobb_mem/mdanalysis_biobb/mda_hole.py (no function) 19 1 0 95%
biobb_mem/test/__init__.py (no function) 0 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityDefault.test_cpptraj_density 4 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityMask.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityMask.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityMask.test_cpptraj_density 4 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityComplex.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityComplex.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityComplex.test_cpptraj_density 4 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py (no function) 14 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py TestFatslimAPLcDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py TestFatslimAPLcDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py TestFatslimAPLcDefault.test_fatslim_apl 4 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py TestFatslimMembranescDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py TestFatslimMembranescDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py TestFatslimMembranescDefault.test_fatslim_membranes 4 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_gromacs/test_gmx_order.py compare_xvg 9 9 0 0%
biobb_mem/test/unitests/test_gromacs/test_gmx_order.py TestGMXOrder.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_gromacs/test_gmx_order.py TestGMXOrder.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_gromacs/test_gmx_order.py TestGMXOrder.test_gmx_order 4 0 0 100%
biobb_mem/test/unitests/test_gromacs/test_gmx_order.py (no function) 8 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.test_lipyphilic_leaflets_default 4 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.test_lipyphilic_leaflets_default 4 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py TestLipyphilicPositionsDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py TestLipyphilicPositionsDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py TestLipyphilicPositionsDefault.test_lipyphilic_positons_default 4 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py TestMDAHole.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py TestMDAHole.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py TestMDAHole.test_mda_hole_default 4 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py (no function) 6 0 0 100%
Total   810 239 0 70%

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