Coverage report: 82%

Files Functions Classes

coverage.py v7.10.7, created at 2025-10-03 16:03 +0000

File function statements missing excluded coverage
biobb_mem/__init__.py (no function) 6 0 0 100%
biobb_mem/ambertools/__init__.py (no function) 2 0 0 100%
biobb_mem/ambertools/cpptraj_density.py CpptrajDensity.__init__ 20 0 0 100%
biobb_mem/ambertools/cpptraj_density.py CpptrajDensity.create_instructions_file 18 5 0 72%
biobb_mem/ambertools/cpptraj_density.py CpptrajDensity.launch 10 1 0 90%
biobb_mem/ambertools/cpptraj_density.py cpptraj_density 1 0 0 100%
biobb_mem/ambertools/cpptraj_density.py (no function) 13 1 0 92%
biobb_mem/fatslim/__init__.py (no function) 2 0 0 100%
biobb_mem/fatslim/common.py set_box 3 0 0 100%
biobb_mem/fatslim/common.py ignore_no_box 6 2 0 67%
biobb_mem/fatslim/common.py move_output_file 7 1 0 86%
biobb_mem/fatslim/common.py (no function) 8 0 0 100%
biobb_mem/fatslim/fatslim_apl.py FatslimAPL.__init__ 15 0 0 100%
biobb_mem/fatslim/fatslim_apl.py FatslimAPL.launch 23 3 0 87%
biobb_mem/fatslim/fatslim_apl.py fatslim_apl 1 0 0 100%
biobb_mem/fatslim/fatslim_apl.py (no function) 13 1 0 92%
biobb_mem/fatslim/fatslim_membranes.py FatslimMembranes.__init__ 14 0 0 100%
biobb_mem/fatslim/fatslim_membranes.py FatslimMembranes.launch 29 9 0 69%
biobb_mem/fatslim/fatslim_membranes.py fatslim_membranes 1 0 0 100%
biobb_mem/fatslim/fatslim_membranes.py parse_index 12 12 0 0%
biobb_mem/fatslim/fatslim_membranes.py display_fatslim 23 23 0 0%
biobb_mem/fatslim/fatslim_membranes.py (no function) 16 1 0 94%
biobb_mem/gorder/__init__.py (no function) 2 0 0 100%
biobb_mem/gorder/gorder_aa.py GorderAA.__init__ 10 0 0 100%
biobb_mem/gorder/gorder_aa.py GorderAA.launch 10 1 0 90%
biobb_mem/gorder/gorder_aa.py gorder_aa 1 0 0 100%
biobb_mem/gorder/gorder_aa.py (no function) 12 1 0 92%
biobb_mem/gorder/gorder_cg.py GorderCG.__init__ 9 0 0 100%
biobb_mem/gorder/gorder_cg.py GorderCG.launch 9 1 0 89%
biobb_mem/gorder/gorder_cg.py gorder_cg 1 0 0 100%
biobb_mem/gorder/gorder_cg.py (no function) 12 1 0 92%
biobb_mem/gorder/gorder_ua.py GorderUA.__init__ 10 0 0 100%
biobb_mem/gorder/gorder_ua.py GorderUA.launch 9 1 0 89%
biobb_mem/gorder/gorder_ua.py gorder_ua 1 0 0 100%
biobb_mem/gorder/gorder_ua.py (no function) 12 1 0 92%
biobb_mem/lipyphilic_biobb/__init__.py (no function) 2 0 0 100%
biobb_mem/lipyphilic_biobb/common.py set_box 8 8 0 0%
biobb_mem/lipyphilic_biobb/common.py ignore_no_box 6 5 0 17%
biobb_mem/lipyphilic_biobb/common.py (no function) 5 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py LPPAssignLeaflets.__init__ 15 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py LPPAssignLeaflets.launch 21 3 0 86%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py lpp_assign_leaflets 1 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py display_nglview 15 15 0 0%
biobb_mem/lipyphilic_biobb/lpp_assign_leaflets.py (no function) 17 1 0 94%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py LPPFlipFlop.__init__ 13 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py LPPFlipFlop.launch 24 3 0 88%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py lpp_flip_flop 1 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_flip_flop.py (no function) 16 1 0 94%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py LPPZPositions.__init__ 16 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py LPPZPositions.launch 17 1 0 94%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py lpp_zpositions 1 0 0 100%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py frame_df 5 5 0 0%
biobb_mem/lipyphilic_biobb/lpp_zpositions.py (no function) 17 1 0 94%
biobb_mem/mdanalysis_biobb/__init__.py (no function) 2 0 0 100%
biobb_mem/mdanalysis_biobb/mda_hole.py MDAHole.__init__ 17 0 0 100%
biobb_mem/mdanalysis_biobb/mda_hole.py MDAHole.launch 23 1 0 96%
biobb_mem/mdanalysis_biobb/mda_hole.py mda_hole 1 0 0 100%
biobb_mem/mdanalysis_biobb/mda_hole.py display_hole 32 32 0 0%
biobb_mem/mdanalysis_biobb/mda_hole.py (no function) 18 1 0 94%
biobb_mem/test/__init__.py (no function) 0 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityDefault.test_cpptraj_density 4 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityMask.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityMask.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityMask.test_cpptraj_density 4 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityComplex.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityComplex.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py TestCpptrajDensityComplex.test_cpptraj_density 4 0 0 100%
biobb_mem/test/unitests/test_ambertools/test_cpptraj_density.py (no function) 14 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py TestFatslimAPLcDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py TestFatslimAPLcDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py TestFatslimAPLcDefault.test_fatslim_apl 4 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_apl.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py TestFatslimMembranescDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py TestFatslimMembranescDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py TestFatslimMembranescDefault.test_fatslim_membranes 4 0 0 100%
biobb_mem/test/unitests/test_fatslim/test_fatslim_membranes.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_aa.py TestGOrderAA.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_aa.py TestGOrderAA.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_aa.py TestGOrderAA.test_gorder_aa 4 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_aa.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_cg.py TestGOrderCG.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_cg.py TestGOrderCG.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_cg.py TestGOrderCG.test_gorder_cg 4 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_cg.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_ua.py TestGOrderUA.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_ua.py TestGOrderUA.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_ua.py TestGOrderUA.test_gorder_ua 4 0 0 100%
biobb_mem/test/unitests/test_gorder/test_gorder_ua.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py TestLipyphilicLeafletsDefault.test_lipyphilic_leaflets_default 4 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_assign_leaflets.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py TestLipyphilicLeafletsDefault.test_lipyphilic_leaflets_default 4 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_flip_flop.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py TestLipyphilicPositionsDefault.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py TestLipyphilicPositionsDefault.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py TestLipyphilicPositionsDefault.test_lipyphilic_positons_default 4 0 0 100%
biobb_mem/test/unitests/test_lipyphilic_biobb/test_lpp_zpositions.py (no function) 6 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py TestMDAHole.setup_class 1 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py TestMDAHole.teardown_class 2 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py TestMDAHole.test_mda_hole_default 4 0 0 100%
biobb_mem/test/unitests/test_mdanalysis_biobb/test_mdanalays_biobb.py (no function) 6 0 0 100%
Total   786 142 0 82%

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