Coverage report: 80%

Files Functions Classes

coverage.py v7.6.10, created at 2025-01-28 11:54 +0000

File class statements missing excluded coverage
biobb_structure_utils/__init__.py (no class) 4 0 0 100%
biobb_structure_utils/gro_lib/__init__.py (no class) 0 0 0 100%
biobb_structure_utils/gro_lib/gro.py Gro 189 59 0 69%
biobb_structure_utils/gro_lib/gro.py (no class) 21 0 0 100%
biobb_structure_utils/test/__init__.py (no class) 0 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_cat_pdb.py TestCatPDB 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_cat_pdb.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_closest_residues.py TestClosestResidues 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_closest_residues.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_gro.py TestExtractAtomsGRO 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_gro.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_pdb.py TestExtractAtomsPDB 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_pdb.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_chain.py TestExtractChain 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_chain.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_heteroatom.py TestExtractHeteroAtoms 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_heteroatom.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_model.py TestExtractModel 5 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_model.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_molecule.py TestExtractMolecule 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_molecule.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_residues.py TestExtractResidues 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_extract_residues.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_gro.py TestRemoveLigandGro 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_gro.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_pdb.py TestRemoveLigandPDB 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_pdb.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_molecules.py TestRemoveMolecules 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_molecules.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_pdb_water.py TestRemovePDBWater 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_remove_pdb_water.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_2vgb.py TestRenumberStructure2VGB 8 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_2vgb.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_gro.py TestRenumberStructureGRO 8 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_gro.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_pdb.py TestRenumberStructurePDB 8 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_pdb.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_smallgro.py TestRenumberStructureSMALLGRO 8 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_smallgro.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_sort_gro_residues.py TestSortGroResidues 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_sort_gro_residues.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py TestStrCheckAddHydrogens 5 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py (no class) 6 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_structure_check.py TestStructureCheck 5 0 0 100%
biobb_structure_utils/test/unitests/test_utils/test_structure_check.py (no class) 6 0 0 100%
biobb_structure_utils/utils/__init__.py (no class) 3 0 0 100%
biobb_structure_utils/utils/cat_pdb.py CatPDB 33 1 0 97%
biobb_structure_utils/utils/cat_pdb.py (no class) 26 12 0 54%
biobb_structure_utils/utils/closest_residues.py ClosestResidues 58 7 0 88%
biobb_structure_utils/utils/closest_residues.py (no class) 27 11 0 59%
biobb_structure_utils/utils/common.py (no class) 144 29 0 80%
biobb_structure_utils/utils/extract_atoms.py ExtractAtoms 39 4 0 90%
biobb_structure_utils/utils/extract_atoms.py (no class) 29 11 0 62%
biobb_structure_utils/utils/extract_chain.py ExtractChain 32 4 0 88%
biobb_structure_utils/utils/extract_chain.py (no class) 35 15 0 57%
biobb_structure_utils/utils/extract_heteroatoms.py ExtractHeteroAtoms 42 7 0 83%
biobb_structure_utils/utils/extract_heteroatoms.py (no class) 27 11 0 59%
biobb_structure_utils/utils/extract_model.py ExtractModel 39 3 0 92%
biobb_structure_utils/utils/extract_model.py (no class) 35 15 0 57%
biobb_structure_utils/utils/extract_molecule.py ExtractMolecule 34 4 0 88%
biobb_structure_utils/utils/extract_molecule.py (no class) 27 11 0 59%
biobb_structure_utils/utils/extract_residues.py ExtractResidues 37 4 0 89%
biobb_structure_utils/utils/extract_residues.py (no class) 27 11 0 59%
biobb_structure_utils/utils/remove_ligand.py RemoveLigand 28 1 0 96%
biobb_structure_utils/utils/remove_ligand.py (no class) 27 11 0 59%
biobb_structure_utils/utils/remove_molecules.py RemoveMolecules 40 4 0 90%
biobb_structure_utils/utils/remove_molecules.py (no class) 27 11 0 59%
biobb_structure_utils/utils/remove_pdb_water.py RemovePdbWater 16 1 0 94%
biobb_structure_utils/utils/remove_pdb_water.py (no class) 24 11 0 54%
biobb_structure_utils/utils/renumber_structure.py RenumberStructure 58 1 0 98%
biobb_structure_utils/utils/renumber_structure.py (no class) 30 12 0 60%
biobb_structure_utils/utils/sort_gro_residues.py SortGroResidues 19 1 0 95%
biobb_structure_utils/utils/sort_gro_residues.py (no class) 26 11 0 58%
biobb_structure_utils/utils/str_check_add_hydrogens.py StrCheckAddHydrogens 39 4 0 90%
biobb_structure_utils/utils/str_check_add_hydrogens.py (no class) 25 11 0 56%
biobb_structure_utils/utils/structure_check.py StructureCheck 32 3 0 91%
biobb_structure_utils/utils/structure_check.py (no class) 26 11 0 58%
Total   1570 312 0 80%

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