Coverage report:
90%
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Files
Functions
Classes
coverage.py v7.5.3
, created at 2024-06-14 19:03 +0000
File
class
statements
missing
excluded
coverage
biobb_structure_utils/__init__.py
(no class)
3
0
0
100%
biobb_structure_utils/gro_lib/__init__.py
(no class)
0
0
0
100%
biobb_structure_utils/gro_lib/gro.py
Gro
189
59
0
69%
biobb_structure_utils/gro_lib/gro.py
(no class)
21
0
0
100%
biobb_structure_utils/test/__init__.py
(no class)
0
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_cat_pdb.py
TestCatPDB
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_cat_pdb.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_closest_residues.py
TestClosestResidues
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_closest_residues.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_gro.py
TestExtractAtomsGRO
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_gro.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_pdb.py
TestExtractAtomsPDB
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_atoms_pdb.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_chain.py
TestExtractChain
6
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0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_chain.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_heteroatom.py
TestExtractHeteroAtoms
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_heteroatom.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_model.py
TestExtractModel
5
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_model.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_molecule.py
TestExtractMolecule
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_molecule.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_residues.py
TestExtractResidues
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_extract_residues.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_gro.py
TestRemoveLigandGro
6
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0
100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_gro.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_pdb.py
TestRemoveLigandPDB
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_remove_ligand_pdb.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_remove_molecules.py
TestRemoveMolecules
6
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100%
biobb_structure_utils/test/unitests/test_utils/test_remove_molecules.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_remove_pdb_water.py
TestRemovePDBWater
6
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0
100%
biobb_structure_utils/test/unitests/test_utils/test_remove_pdb_water.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_2vgb.py
TestRenumberStructure2VGB
8
0
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100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_2vgb.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_gro.py
TestRenumberStructureGRO
8
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_gro.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_pdb.py
TestRenumberStructurePDB
8
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_pdb.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_smallgro.py
TestRenumberStructureSMALLGRO
8
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_smallgro.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_sort_gro_residues.py
TestSortGroResidues
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_sort_gro_residues.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py
TestStrCheckAddHydrogens
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py
(no class)
6
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_structure_check.py
TestStructureCheck
5
0
0
100%
biobb_structure_utils/test/unitests/test_utils/test_structure_check.py
(no class)
6
0
0
100%
biobb_structure_utils/utils/__init__.py
(no class)
2
0
0
100%
biobb_structure_utils/utils/cat_pdb.py
CatPDB
34
1
0
97%
biobb_structure_utils/utils/cat_pdb.py
(no class)
13
1
0
92%
biobb_structure_utils/utils/closest_residues.py
ClosestResidues
59
7
0
88%
biobb_structure_utils/utils/closest_residues.py
(no class)
15
1
0
93%
biobb_structure_utils/utils/common.py
(no class)
18
0
0
100%
biobb_structure_utils/utils/extract_atoms.py
ExtractAtoms
40
4
0
90%
biobb_structure_utils/utils/extract_atoms.py
(no class)
17
1
0
94%
biobb_structure_utils/utils/extract_chain.py
ExtractChain
33
4
0
88%
biobb_structure_utils/utils/extract_chain.py
(no class)
16
1
0
94%
biobb_structure_utils/utils/extract_heteroatoms.py
ExtractHeteroAtoms
43
7
0
84%
biobb_structure_utils/utils/extract_heteroatoms.py
(no class)
15
1
0
93%
biobb_structure_utils/utils/extract_model.py
ExtractModel
39
3
0
92%
biobb_structure_utils/utils/extract_model.py
(no class)
16
1
0
94%
biobb_structure_utils/utils/extract_molecule.py
ExtractMolecule
34
4
0
88%
biobb_structure_utils/utils/extract_molecule.py
(no class)
15
1
0
93%
biobb_structure_utils/utils/extract_residues.py
ExtractResidues
38
4
0
89%
biobb_structure_utils/utils/extract_residues.py
(no class)
15
1
0
93%
biobb_structure_utils/utils/remove_ligand.py
RemoveLigand
29
1
0
97%
biobb_structure_utils/utils/remove_ligand.py
(no class)
15
1
0
93%
biobb_structure_utils/utils/remove_molecules.py
RemoveMolecules
41
4
0
90%
biobb_structure_utils/utils/remove_molecules.py
(no class)
15
1
0
93%
biobb_structure_utils/utils/remove_pdb_water.py
RemovePdbWater
17
1
0
94%
biobb_structure_utils/utils/remove_pdb_water.py
(no class)
12
1
0
92%
biobb_structure_utils/utils/renumber_structure.py
RenumberStructure
59
1
0
98%
biobb_structure_utils/utils/renumber_structure.py
(no class)
17
1
0
94%
biobb_structure_utils/utils/sort_gro_residues.py
SortGroResidues
20
1
0
95%
biobb_structure_utils/utils/sort_gro_residues.py
(no class)
13
1
0
92%
biobb_structure_utils/utils/str_check_add_hydrogens.py
StrCheckAddHydrogens
40
4
0
90%
biobb_structure_utils/utils/str_check_add_hydrogens.py
(no class)
13
1
0
92%
biobb_structure_utils/utils/structure_check.py
StructureCheck
32
3
0
91%
biobb_structure_utils/utils/structure_check.py
(no class)
14
1
0
93%
Total
1258
123
0
90%
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