Coverage report: 89%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-22 13:23 +0000

File class   statements missing excluded   coverage
biobb_structure_utils / __init__.py (no class)   4 0 0   100%
biobb_structure_utils / gro_lib / __init__.py (no class)   0 0 0   100%
biobb_structure_utils / gro_lib / gro.py Gro   189 59 0   69%
biobb_structure_utils / gro_lib / gro.py (no class)   21 0 0   100%
biobb_structure_utils / test / __init__.py (no class)   0 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_cat_pdb.py TestCatPDB   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_cat_pdb.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_closest_residues.py TestClosestResidues   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_closest_residues.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_atoms_gro.py TestExtractAtomsGRO   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_atoms_gro.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_atoms_pdb.py TestExtractAtomsPDB   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_atoms_pdb.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_chain.py TestExtractChain   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_chain.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_heteroatom.py TestExtractHeteroAtoms   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_heteroatom.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_model.py TestExtractModel   5 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_model.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_molecule.py TestExtractMolecule   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_molecule.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_residues.py TestExtractResidues   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_extract_residues.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_ligand_gro.py TestRemoveLigandGro   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_ligand_gro.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_ligand_pdb.py TestRemoveLigandPDB   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_ligand_pdb.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_molecules.py TestRemoveMolecules   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_molecules.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_pdb_water.py TestRemovePDBWater   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_remove_pdb_water.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_2vgb.py TestRenumberStructure2VGB   8 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_2vgb.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_gro.py TestRenumberStructureGRO   8 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_gro.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_pdb.py TestRenumberStructurePDB   8 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_pdb.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_smallgro.py TestRenumberStructureSMALLGRO   8 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_renumber_structure_smallgro.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_sort_gro_residues.py TestSortGroResidues   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_sort_gro_residues.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_str_check_add_hydrogens.py TestStrCheckAddHydrogens   5 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_str_check_add_hydrogens.py (no class)   6 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_structure_check.py TestStructureCheck   5 0 0   100%
biobb_structure_utils / test / unitests / test_utils / test_structure_check.py (no class)   6 0 0   100%
biobb_structure_utils / utils / __init__.py (no class)   3 0 0   100%
biobb_structure_utils / utils / cat_pdb.py CatPDB   33 1 0   97%
biobb_structure_utils / utils / cat_pdb.py (no class)   14 1 0   93%
biobb_structure_utils / utils / closest_residues.py ClosestResidues   58 7 0   88%
biobb_structure_utils / utils / closest_residues.py (no class)   16 1 0   94%
biobb_structure_utils / utils / common.py (no class)   144 29 0   80%
biobb_structure_utils / utils / extract_atoms.py ExtractAtoms   39 4 0   90%
biobb_structure_utils / utils / extract_atoms.py (no class)   18 1 0   94%
biobb_structure_utils / utils / extract_chain.py ExtractChain   32 4 0   88%
biobb_structure_utils / utils / extract_chain.py (no class)   24 5 0   79%
biobb_structure_utils / utils / extract_heteroatoms.py ExtractHeteroAtoms   42 7 0   83%
biobb_structure_utils / utils / extract_heteroatoms.py (no class)   16 1 0   94%
biobb_structure_utils / utils / extract_model.py ExtractModel   39 3 0   92%
biobb_structure_utils / utils / extract_model.py (no class)   24 5 0   79%
biobb_structure_utils / utils / extract_molecule.py ExtractMolecule   34 4 0   88%
biobb_structure_utils / utils / extract_molecule.py (no class)   16 1 0   94%
biobb_structure_utils / utils / extract_residues.py ExtractResidues   37 4 0   89%
biobb_structure_utils / utils / extract_residues.py (no class)   16 1 0   94%
biobb_structure_utils / utils / remove_ligand.py RemoveLigand   28 1 0   96%
biobb_structure_utils / utils / remove_ligand.py (no class)   16 1 0   94%
biobb_structure_utils / utils / remove_molecules.py RemoveMolecules   40 4 0   90%
biobb_structure_utils / utils / remove_molecules.py (no class)   16 1 0   94%
biobb_structure_utils / utils / remove_pdb_water.py RemovePdbWater   16 1 0   94%
biobb_structure_utils / utils / remove_pdb_water.py (no class)   13 1 0   92%
biobb_structure_utils / utils / renumber_structure.py RenumberStructure   58 1 0   98%
biobb_structure_utils / utils / renumber_structure.py (no class)   18 1 0   94%
biobb_structure_utils / utils / sort_gro_residues.py SortGroResidues   19 1 0   95%
biobb_structure_utils / utils / sort_gro_residues.py (no class)   15 1 0   93%
biobb_structure_utils / utils / str_check_add_hydrogens.py StrCheckAddHydrogens   39 4 0   90%
biobb_structure_utils / utils / str_check_add_hydrogens.py (no class)   14 1 0   93%
biobb_structure_utils / utils / structure_check.py StructureCheck   32 3 0   91%
biobb_structure_utils / utils / structure_check.py (no class)   15 1 0   93%
Total     1403 160 0   89%

No items found using the specified filter.