| biobb_structure_utils/__init__.py |
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Gro.__init__ |
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TestCatPDB.setup_class |
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TestCatPDB.test_launch |
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TestClosestResidues.setup_class |
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TestClosestResidues.teardown_class |
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TestClosestResidues.test_launch |
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TestExtractAtomsGRO.setup_class |
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TestExtractAtomsGRO.test_launch |
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TestExtractAtomsPDB.setup_class |
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TestExtractAtomsPDB.teardown_class |
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TestExtractAtomsPDB.test_launch |
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TestExtractChain.setup_class |
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TestExtractChain.teardown_class |
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TestExtractChain.test_launch |
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TestExtractHeteroAtoms.setup_class |
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TestExtractHeteroAtoms.teardown_class |
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TestExtractHeteroAtoms.test_launch |
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TestExtractModel.setup_class |
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TestExtractModel.teardown_class |
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TestExtractModel.test_launch |
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TestExtractMolecule.setup_class |
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TestExtractMolecule.teardown_class |
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TestExtractMolecule.test_launch |
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TestExtractResidues.setup_class |
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TestExtractResidues.teardown_class |
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TestExtractResidues.test_launch |
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TestRemoveLigandGro.setup_class |
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TestRemoveLigandGro.teardown_class |
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TestRemoveLigandGro.test_launch |
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TestRemoveLigandPDB.setup_class |
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TestRemoveLigandPDB.teardown_class |
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TestRemoveLigandPDB.test_launch |
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TestRemoveMolecules.setup_class |
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TestRemoveMolecules.teardown_class |
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TestRemoveMolecules.test_launch |
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TestRemovePDBWater.setup_class |
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TestRemovePDBWater.teardown_class |
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TestRemovePDBWater.test_launch |
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TestRenumberStructure2VGB.setup_class |
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TestRenumberStructure2VGB.teardown_class |
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| biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_2vgb.py |
TestRenumberStructure2VGB.test_launch |
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TestRenumberStructureGRO.setup_class |
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TestRenumberStructureGRO.teardown_class |
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| biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_gro.py |
TestRenumberStructureGRO.test_launch |
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(no function) |
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| biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_pdb.py |
TestRenumberStructurePDB.setup_class |
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TestRenumberStructurePDB.teardown_class |
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| biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_pdb.py |
TestRenumberStructurePDB.test_launch |
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(no function) |
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TestRenumberStructureSMALLGRO.setup_class |
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TestRenumberStructureSMALLGRO.teardown_class |
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| biobb_structure_utils/test/unitests/test_utils/test_renumber_structure_smallgro.py |
TestRenumberStructureSMALLGRO.test_launch |
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(no function) |
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| biobb_structure_utils/test/unitests/test_utils/test_sort_gro_residues.py |
TestSortGroResidues.setup_class |
1 |
0 |
0 |
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| biobb_structure_utils/test/unitests/test_utils/test_sort_gro_residues.py |
TestSortGroResidues.teardown_class |
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0 |
0 |
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| biobb_structure_utils/test/unitests/test_utils/test_sort_gro_residues.py |
TestSortGroResidues.test_launch |
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(no function) |
6 |
0 |
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| biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py |
TestStrCheckAddHydrogens.setup_class |
1 |
0 |
0 |
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| biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py |
TestStrCheckAddHydrogens.teardown_class |
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| biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py |
TestStrCheckAddHydrogens.test_str_check_add_hydrogens |
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0 |
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| biobb_structure_utils/test/unitests/test_utils/test_str_check_add_hydrogens.py |
(no function) |
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| biobb_structure_utils/test/unitests/test_utils/test_structure_check.py |
TestStructureCheck.setup_class |
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| biobb_structure_utils/test/unitests/test_utils/test_structure_check.py |
TestStructureCheck.teardown_class |
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TestStructureCheck.test_launch |
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(no function) |
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| biobb_structure_utils/utils/__init__.py |
(no function) |
3 |
0 |
0 |
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| biobb_structure_utils/utils/cat_pdb.py |
CatPDB.__init__ |
7 |
0 |
0 |
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| biobb_structure_utils/utils/cat_pdb.py |
CatPDB.launch |
26 |
1 |
0 |
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| biobb_structure_utils/utils/cat_pdb.py |
cat_pdb |
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0 |
0 |
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| biobb_structure_utils/utils/cat_pdb.py |
main |
10 |
10 |
0 |
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(no function) |
14 |
1 |
0 |
93% |
| biobb_structure_utils/utils/closest_residues.py |
ClosestResidues.__init__ |
10 |
0 |
0 |
100% |
| biobb_structure_utils/utils/closest_residues.py |
ClosestResidues.launch |
48 |
7 |
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| biobb_structure_utils/utils/closest_residues.py |
closest_residues |
1 |
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0 |
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| biobb_structure_utils/utils/closest_residues.py |
main |
9 |
9 |
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(no function) |
16 |
1 |
0 |
94% |
| biobb_structure_utils/utils/common.py |
check_input_path |
10 |
5 |
0 |
50% |
| biobb_structure_utils/utils/common.py |
check_output_path |
8 |
4 |
0 |
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| biobb_structure_utils/utils/common.py |
check_output_path_pdbqt |
8 |
4 |
0 |
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check_output_path_json |
8 |
4 |
0 |
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| biobb_structure_utils/utils/common.py |
is_valid_pdb |
2 |
0 |
0 |
100% |
| biobb_structure_utils/utils/common.py |
is_valid_pdbqt |
2 |
0 |
0 |
100% |
| biobb_structure_utils/utils/common.py |
is_valid_json |
2 |
0 |
0 |
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| biobb_structure_utils/utils/common.py |
check_output_end |
10 |
0 |
0 |
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create_output_file |
28 |
1 |
0 |
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| biobb_structure_utils/utils/common.py |
create_biopython_residue |
1 |
0 |
0 |
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create_residues_list |
20 |
3 |
0 |
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check_format_heteroatoms |
17 |
3 |
0 |
82% |
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_from_string_to_list |
8 |
5 |
0 |
38% |
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(no function) |
20 |
0 |
0 |
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| biobb_structure_utils/utils/extract_atoms.py |
ExtractAtoms.__init__ |
7 |
0 |
0 |
100% |
| biobb_structure_utils/utils/extract_atoms.py |
ExtractAtoms.launch |
32 |
4 |
0 |
88% |
| biobb_structure_utils/utils/extract_atoms.py |
extract_atoms |
1 |
0 |
0 |
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| biobb_structure_utils/utils/extract_atoms.py |
main |
9 |
9 |
0 |
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| biobb_structure_utils/utils/extract_atoms.py |
(no function) |
18 |
1 |
0 |
94% |
| biobb_structure_utils/utils/extract_chain.py |
ExtractChain.__init__ |
10 |
0 |
0 |
100% |
| biobb_structure_utils/utils/extract_chain.py |
ExtractChain.launch |
22 |
4 |
0 |
82% |
| biobb_structure_utils/utils/extract_chain.py |
check_format_chains |
7 |
4 |
0 |
43% |
| biobb_structure_utils/utils/extract_chain.py |
extract_chain |
1 |
0 |
0 |
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| biobb_structure_utils/utils/extract_chain.py |
main |
9 |
9 |
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(no function) |
17 |
1 |
0 |
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| biobb_structure_utils/utils/extract_heteroatoms.py |
ExtractHeteroAtoms.__init__ |
9 |
0 |
0 |
100% |
| biobb_structure_utils/utils/extract_heteroatoms.py |
ExtractHeteroAtoms.launch |
33 |
7 |
0 |
79% |
| biobb_structure_utils/utils/extract_heteroatoms.py |
extract_heteroatoms |
1 |
0 |
0 |
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| biobb_structure_utils/utils/extract_heteroatoms.py |
main |
9 |
9 |
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(no function) |
16 |
1 |
0 |
94% |
| biobb_structure_utils/utils/extract_model.py |
ExtractModel.__init__ |
9 |
0 |
0 |
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ExtractModel.launch |
30 |
3 |
0 |
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| biobb_structure_utils/utils/extract_model.py |
check_format_models |
7 |
4 |
0 |
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extract_model |
1 |
0 |
0 |
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main |
9 |
9 |
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(no function) |
17 |
1 |
0 |
94% |
| biobb_structure_utils/utils/extract_molecule.py |
ExtractMolecule.__init__ |
10 |
0 |
0 |
100% |
| biobb_structure_utils/utils/extract_molecule.py |
ExtractMolecule.create_command_list |
9 |
3 |
0 |
67% |
| biobb_structure_utils/utils/extract_molecule.py |
ExtractMolecule.launch |
15 |
1 |
0 |
93% |
| biobb_structure_utils/utils/extract_molecule.py |
extract_molecule |
1 |
0 |
0 |
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main |
9 |
9 |
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(no function) |
16 |
1 |
0 |
94% |
| biobb_structure_utils/utils/extract_residues.py |
ExtractResidues.__init__ |
8 |
0 |
0 |
100% |
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ExtractResidues.launch |
29 |
4 |
0 |
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extract_residues |
1 |
0 |
0 |
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main |
9 |
9 |
0 |
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(no function) |
16 |
1 |
0 |
94% |
| biobb_structure_utils/utils/remove_ligand.py |
RemoveLigand.__init__ |
7 |
0 |
0 |
100% |
| biobb_structure_utils/utils/remove_ligand.py |
RemoveLigand.launch |
21 |
1 |
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95% |
| biobb_structure_utils/utils/remove_ligand.py |
remove_ligand |
1 |
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| biobb_structure_utils/utils/remove_ligand.py |
main |
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| biobb_structure_utils/utils/remove_ligand.py |
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16 |
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| biobb_structure_utils/utils/remove_molecules.py |
RemoveMolecules.__init__ |
8 |
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100% |
| biobb_structure_utils/utils/remove_molecules.py |
RemoveMolecules.launch |
32 |
4 |
0 |
88% |
| biobb_structure_utils/utils/remove_molecules.py |
remove_molecules |
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| biobb_structure_utils/utils/remove_molecules.py |
main |
9 |
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| biobb_structure_utils/utils/remove_molecules.py |
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16 |
1 |
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| biobb_structure_utils/utils/remove_pdb_water.py |
RemovePdbWater.__init__ |
7 |
0 |
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100% |
| biobb_structure_utils/utils/remove_pdb_water.py |
RemovePdbWater.launch |
9 |
1 |
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| biobb_structure_utils/utils/remove_pdb_water.py |
remove_pdb_water |
1 |
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| biobb_structure_utils/utils/remove_pdb_water.py |
main |
9 |
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| biobb_structure_utils/utils/remove_pdb_water.py |
(no function) |
13 |
1 |
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| biobb_structure_utils/utils/renumber_structure.py |
RenumberStructure.__init__ |
15 |
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| biobb_structure_utils/utils/renumber_structure.py |
RenumberStructure.launch |
43 |
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| biobb_structure_utils/utils/renumber_structure.py |
renumber_structure |
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| biobb_structure_utils/utils/renumber_structure.py |
main |
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| biobb_structure_utils/utils/renumber_structure.py |
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18 |
1 |
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| biobb_structure_utils/utils/sort_gro_residues.py |
SortGroResidues.__init__ |
7 |
0 |
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| biobb_structure_utils/utils/sort_gro_residues.py |
SortGroResidues.launch |
12 |
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| biobb_structure_utils/utils/sort_gro_residues.py |
sort_gro_residues |
1 |
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| biobb_structure_utils/utils/sort_gro_residues.py |
main |
9 |
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| biobb_structure_utils/utils/sort_gro_residues.py |
(no function) |
15 |
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| biobb_structure_utils/utils/str_check_add_hydrogens.py |
StrCheckAddHydrogens.__init__ |
13 |
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| biobb_structure_utils/utils/str_check_add_hydrogens.py |
StrCheckAddHydrogens.launch |
26 |
4 |
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| biobb_structure_utils/utils/str_check_add_hydrogens.py |
str_check_add_hydrogens |
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| biobb_structure_utils/utils/str_check_add_hydrogens.py |
main |
9 |
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14 |
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| biobb_structure_utils/utils/structure_check.py |
StructureCheck.__init__ |
9 |
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| biobb_structure_utils/utils/structure_check.py |
StructureCheck.launch |
23 |
3 |
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| biobb_structure_utils/utils/structure_check.py |
structure_check |
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| biobb_structure_utils/utils/structure_check.py |
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15 |
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93% |