Coverage report: 86%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-15 18:18 +0000

File class   statements missing excluded   coverage
biobb_analysis / __init__.py (no class)   4 0 0   100%
biobb_analysis / ambertools / __init__.py (no class)   14 0 0   100%
biobb_analysis / ambertools / common.py (no class)   219 76 0   65%
biobb_analysis / ambertools / cpptraj_average.py CpptrajAverage   47 2 0   96%
biobb_analysis / ambertools / cpptraj_average.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_bfactor.py CpptrajBfactor   52 2 0   96%
biobb_analysis / ambertools / cpptraj_bfactor.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_convert.py CpptrajConvert   46 2 0   96%
biobb_analysis / ambertools / cpptraj_convert.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_dry.py CpptrajDry   50 2 0   96%
biobb_analysis / ambertools / cpptraj_dry.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_image.py CpptrajImage   50 2 0   96%
biobb_analysis / ambertools / cpptraj_image.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_input.py CpptrajInput   28 1 0   96%
biobb_analysis / ambertools / cpptraj_input.py (no class)   16 2 0   88%
biobb_analysis / ambertools / cpptraj_mask.py CpptrajMask   51 4 0   92%
biobb_analysis / ambertools / cpptraj_mask.py (no class)   18 1 0   94%
biobb_analysis / ambertools / cpptraj_rgyr.py CpptrajRgyr   44 2 0   95%
biobb_analysis / ambertools / cpptraj_rgyr.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_rms.py CpptrajRms   58 2 0   97%
biobb_analysis / ambertools / cpptraj_rms.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_rmsf.py CpptrajRmsf   52 2 0   96%
biobb_analysis / ambertools / cpptraj_rmsf.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_slice.py CpptrajSlice   46 2 0   96%
biobb_analysis / ambertools / cpptraj_slice.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_snapshot.py CpptrajSnapshot   44 2 0   95%
biobb_analysis / ambertools / cpptraj_snapshot.py (no class)   17 1 0   94%
biobb_analysis / ambertools / cpptraj_strip.py CpptrajStrip   51 4 0   92%
biobb_analysis / ambertools / cpptraj_strip.py (no class)   18 1 0   94%
biobb_analysis / gromacs / __init__.py (no class)   12 0 0   100%
biobb_analysis / gromacs / common.py (no class)   326 129 0   60%
biobb_analysis / gromacs / gmx_check.py GMXCheck   101 31 0   69%
biobb_analysis / gromacs / gmx_check.py (no class)   18 1 0   94%
biobb_analysis / gromacs / gmx_cluster.py GMXCluster   48 5 0   90%
biobb_analysis / gromacs / gmx_cluster.py (no class)   16 1 0   94%
biobb_analysis / gromacs / gmx_energy.py GMXEnergy   35 2 0   94%
biobb_analysis / gromacs / gmx_energy.py (no class)   17 1 0   94%
biobb_analysis / gromacs / gmx_image.py GMXImage   67 19 0   72%
biobb_analysis / gromacs / gmx_image.py (no class)   16 1 0   94%
biobb_analysis / gromacs / gmx_rgyr.py GMXRgyr   33 2 0   94%
biobb_analysis / gromacs / gmx_rgyr.py (no class)   16 1 0   94%
biobb_analysis / gromacs / gmx_rms.py GMXRms   33 2 0   94%
biobb_analysis / gromacs / gmx_rms.py (no class)   16 1 0   94%
biobb_analysis / gromacs / gmx_rmsf.py GMXRmsf   33 2 0   94%
biobb_analysis / gromacs / gmx_rmsf.py (no class)   16 1 0   94%
biobb_analysis / gromacs / gmx_trjconv_str.py GMXTrjConvStr   45 8 0   82%
biobb_analysis / gromacs / gmx_trjconv_str.py (no class)   16 1 0   94%
biobb_analysis / gromacs / gmx_trjconv_str_ens.py GMXTrjConvStrEns   52 4 0   92%
biobb_analysis / gromacs / gmx_trjconv_str_ens.py (no class)   16 1 0   94%
biobb_analysis / gromacs / gmx_trjconv_trj.py GMXTrjConvTrj   57 10 0   82%
biobb_analysis / gromacs / gmx_trjconv_trj.py (no class)   16 1 0   94%
biobb_analysis / test / __init__.py (no class)   0 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_average.py TestCpptrajAverage   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_average.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_bfactor.py TestCpptrajBfactorFirst   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_bfactor.py TestCpptrajBfactorAverage   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_bfactor.py TestCpptrajBfactorExperimental   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_bfactor.py (no class)   14 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_convert.py TestCpptrajConvert   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_convert.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_dry.py TestCpptrajDry   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_dry.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_image.py TestCpptrajImage   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_image.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_input.py TestCpptrajInput   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_input.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_mask.py TestCpptrajMask   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_mask.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rgyr.py TestCpptrajRgyr   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rgyr.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rms.py TestCpptrajRmsFirst   8 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rms.py TestCpptrajRmsAverage   8 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rms.py TestCpptrajRmsExperimental   8 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rms.py (no class)   14 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rmsf.py TestCpptrajRmsfFirst   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rmsf.py TestCpptrajRmsfAverage   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rmsf.py TestCpptrajRmsfExperimental   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_rmsf.py (no class)   14 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_slice.py TestCpptrajSlice   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_slice.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_snapshot.py TestCpptrajSnapshot   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_snapshot.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_strip.py TestCpptrajStrip   6 0 0   100%
biobb_analysis / test / unitests / test_ambertools / test_cpptraj_strip.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_check.py TestGMXCheck   5 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_check.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_cluster.py TestGMXCluster   5 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_cluster.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_energy.py TestGMXEnergy   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_energy.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_image.py TestGMXImage   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_image.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_rgyr.py TestGMXRgyr   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_rgyr.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_rms.py TestGMXRms   7 1 0   86%
biobb_analysis / test / unitests / test_gromacs / test_gmx_rms.py (no class)   7 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_rmsf.py TestGMXRmsf   7 1 0   86%
biobb_analysis / test / unitests / test_gromacs / test_gmx_rmsf.py (no class)   7 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str.py TestGMXTrjConvStr   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str_ens.py TestGMXTrjConvStrEns   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str_ens.py (no class)   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_trj.py TestGMXTrjConvTrj   6 0 0   100%
biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_trj.py (no class)   6 0 0   100%
Total     2427 345 0   86%

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