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get_reference |
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CpptrajAverage.__init__ |
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CpptrajAverage.check_data_params |
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CpptrajAverage.create_instructions_file |
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CpptrajConvert.__init__ |
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CpptrajDry.__init__ |
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CpptrajImage.__init__ |
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CpptrajStrip.__init__ |
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gmx_check |
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| biobb_analysis / gromacs / common.py |
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is_valid_ot_str_ens |
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is_valid_pbc |
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is_valid_ur |
|
2 |
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is_valid_fit |
|
2 |
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| biobb_analysis / gromacs / common.py |
is_valid_term |
|
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0 |
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| biobb_analysis / gromacs / common.py |
is_valid_selection |
|
2 |
2 |
0 |
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| biobb_analysis / gromacs / common.py |
copy_instructions_file_to_container |
|
1 |
1 |
0 |
|
0% |
| biobb_analysis / gromacs / common.py |
remove_tmp_files |
|
4 |
4 |
0 |
|
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| biobb_analysis / gromacs / common.py |
process_output_trjconv_str_ens |
|
8 |
1 |
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|
88% |
| biobb_analysis / gromacs / common.py |
_from_string_to_list |
|
8 |
5 |
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|
38% |
| biobb_analysis / gromacs / common.py |
(no function) |
|
57 |
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| biobb_analysis / gromacs / gmx_check.py |
GMXCheck.__init__ |
|
15 |
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|
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| biobb_analysis / gromacs / gmx_check.py |
GMXCheck._validate_float_property |
|
7 |
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| biobb_analysis / gromacs / gmx_check.py |
GMXCheck._validate_boolean_property |
|
5 |
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| biobb_analysis / gromacs / gmx_check.py |
GMXCheck.check_data_params |
|
31 |
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68% |
| biobb_analysis / gromacs / gmx_check.py |
GMXCheck.launch |
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65% |
| biobb_analysis / gromacs / gmx_check.py |
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GMXTrjConvStr.__init__ |
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TestCpptrajRmsAverage.test_rms_average |
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TestCpptrajRmsExperimental.test_rms_experimental |
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14 |
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TestCpptrajRmsfAverage.teardown_class |
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TestCpptrajRmsfAverage.test_rmsf_average |
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TestCpptrajRmsfExperimental.setup_class |
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TestCpptrajRmsfExperimental.teardown_class |
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1 |
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TestCpptrajStrip.test_strip |
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3 |
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6 |
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TestGMXCheck.teardown_class |
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2 |
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TestGMXCheck.test_check |
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(no function) |
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6 |
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0 |
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TestGMXCluster.setup_class |
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1 |
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0 |
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TestGMXCluster.teardown_class |
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1 |
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0 |
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TestGMXCluster.test_cluster |
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3 |
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0 |
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(no function) |
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6 |
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0 |
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TestGMXEnergy.setup_class |
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1 |
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0 |
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TestGMXEnergy.teardown_class |
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2 |
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0 |
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TestGMXEnergy.test_energy |
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3 |
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0 |
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(no function) |
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6 |
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0 |
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TestGMXImage.setup_class |
|
1 |
0 |
0 |
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TestGMXImage.teardown_class |
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2 |
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0 |
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| biobb_analysis / test / unitests / test_gromacs / test_gmx_image.py |
TestGMXImage.test_image |
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3 |
0 |
0 |
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100% |
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(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rgyr.py |
TestGMXRgyr.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rgyr.py |
TestGMXRgyr.teardown_class |
|
2 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rgyr.py |
TestGMXRgyr.test_rgyr |
|
3 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rgyr.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rms.py |
TestGMXRms.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rms.py |
TestGMXRms.teardown_class |
|
2 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rms.py |
TestGMXRms.test_rms |
|
4 |
1 |
0 |
|
75% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rms.py |
(no function) |
|
7 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rmsf.py |
TestGMXRmsf.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rmsf.py |
TestGMXRmsf.teardown_class |
|
2 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rmsf.py |
TestGMXRmsf.test_rmsf |
|
4 |
1 |
0 |
|
75% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_rmsf.py |
(no function) |
|
7 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str.py |
TestGMXTrjConvStr.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str.py |
TestGMXTrjConvStr.teardown_class |
|
2 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str.py |
TestGMXTrjConvStr.test_trjconv_str |
|
3 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str_ens.py |
TestGMXTrjConvStrEns.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str_ens.py |
TestGMXTrjConvStrEns.teardown_class |
|
2 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str_ens.py |
TestGMXTrjConvStrEns.test_trjconv_str_ens |
|
3 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_str_ens.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_trj.py |
TestGMXTrjConvTrj.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_trj.py |
TestGMXTrjConvTrj.teardown_class |
|
2 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_trj.py |
TestGMXTrjConvTrj.test_trjconv_trj |
|
3 |
0 |
0 |
|
100% |
| biobb_analysis / test / unitests / test_gromacs / test_gmx_trjconv_trj.py |
(no function) |
|
6 |
0 |
0 |
|
100% |