Coverage report: 52%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-22 12:26 +0000

File function   statements missing excluded   coverage
biobb_cmip / __init__.py (no function)   4 0 0   100%
biobb_cmip / cmip / __init__.py (no function)   7 0 0   100%
biobb_cmip / cmip / cmip_ignore_residues.py CmipIgnoreResidues.__init__   8 0 0   100%
biobb_cmip / cmip / cmip_ignore_residues.py CmipIgnoreResidues.launch   22 6 0   73%
biobb_cmip / cmip / cmip_ignore_residues.py cmip_ignore_residues   1 0 0   100%
biobb_cmip / cmip / cmip_ignore_residues.py (no function)   15 1 0   93%
biobb_cmip / cmip / cmip_prepare_pdb.py CmipPreparePDB.__init__   11 0 0   100%
biobb_cmip / cmip / cmip_prepare_pdb.py CmipPreparePDB.launch   20 2 0   90%
biobb_cmip / cmip / cmip_prepare_pdb.py cmip_prepare_pdb   1 0 0   100%
biobb_cmip / cmip / cmip_prepare_pdb.py (no function)   12 1 0   92%
biobb_cmip / cmip / cmip_prepare_structure.py CmipPrepareStructure.__init__   6 0 0   100%
biobb_cmip / cmip / cmip_prepare_structure.py CmipPrepareStructure.launch   22 3 0   86%
biobb_cmip / cmip / cmip_prepare_structure.py cmip_prepare_structure   1 0 0   100%
biobb_cmip / cmip / cmip_prepare_structure.py (no function)   20 1 0   95%
biobb_cmip / cmip / cmip_run.py CmipRun.__init__   12 0 0   100%
biobb_cmip / cmip / cmip_run.py CmipRun.launch   100 64 0   36%
biobb_cmip / cmip / cmip_run.py cmip_run   1 0 0   100%
biobb_cmip / cmip / cmip_run.py (no function)   21 1 0   95%
biobb_cmip / cmip / cmip_titration.py CmipTitration.__init__   16 16 0   0%
biobb_cmip / cmip / cmip_titration.py CmipTitration.launch   33 33 0   0%
biobb_cmip / cmip / cmip_titration.py cmip_titration   1 1 0   0%
biobb_cmip / cmip / cmip_titration.py (no function)   19 1 0   95%
biobb_cmip / cmip / common.py get_grid   7 7 0   0%
biobb_cmip / cmip / common.py _get_grid_from_box_file   5 5 0   0%
biobb_cmip / cmip / common.py _get_grid_from_text   30 30 0   0%
biobb_cmip / cmip / common.py _get_grid_from_key_value   30 30 0   0%
biobb_cmip / cmip / common.py create_unique_file_path   9 2 0   78%
biobb_cmip / cmip / common.py write_cmip_pdb   8 0 0   100%
biobb_cmip / cmip / common.py get_topology_cmip_elements_canonical   23 1 0   96%
biobb_cmip / cmip / common.py get_topology_charges   13 1 0   92%
biobb_cmip / cmip / common.py Residue.__init__   3 3 0   0%
biobb_cmip / cmip / common.py ResiduesDataLib.__init__   9 9 0   0%
biobb_cmip / cmip / common.py ResiduesDataLib.getParams   4 4 0   0%
biobb_cmip / cmip / common.py get_pdb_charges   27 27 0   0%
biobb_cmip / cmip / common.py get_pdb_cmip_elements_canonical   27 27 0   0%
biobb_cmip / cmip / common.py get_pdb_total_charge   6 6 0   0%
biobb_cmip / cmip / common.py probe_params_grid   6 0 0   100%
biobb_cmip / cmip / common.py params_grid   10 3 0   70%
biobb_cmip / cmip / common.py params_preset   31 17 0   45%
biobb_cmip / cmip / common.py read_params_file   24 24 0   0%
biobb_cmip / cmip / common.py write_params_file   9 0 0   100%
biobb_cmip / cmip / common.py create_params_file   12 5 0   58%
biobb_cmip / cmip / common.py mark_residues   20 2 0   90%
biobb_cmip / cmip / common.py _mark_pdb_atom   3 0 0   100%
biobb_cmip / cmip / common.py _get_residue_code_in_list   14 4 0   71%
biobb_cmip / cmip / common.py _get_residue_code   1 0 0   100%
biobb_cmip / cmip / common.py _get_chain   1 0 0   100%
biobb_cmip / cmip / common.py _get_resnum   1 0 0   100%
biobb_cmip / cmip / common.py _is_atom   1 0 0   100%
biobb_cmip / cmip / common.py (no function)   39 0 0   100%
biobb_cmip / test / __init__.py (no function)   0 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_ignore_residues.py TestCmipIgnoreResidues.setup_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_ignore_residues.py TestCmipIgnoreResidues.teardown_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_ignore_residues.py TestCmipIgnoreResidues.test_cmip_ignore_residues   3 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_ignore_residues.py (no function)   6 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_pdb.py TestCmipPreparePDB.setup_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_pdb.py TestCmipPreparePDB.teardown_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_pdb.py TestCmipPreparePDB.test_cmip_prepare_pdb   3 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_pdb.py (no function)   6 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_structure.py TestCmipPrepareStructureTopology.setup_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_structure.py TestCmipPrepareStructureTopology.teardown_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_structure.py TestCmipPrepareStructureTopology.test_cmip_prepare_structure_Topology   3 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_prepare_structure.py (no function)   6 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_run.py TestCmipRunEnergy.setup_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_run.py TestCmipRunEnergy.teardown_class   1 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_run.py TestCmipRunEnergy.test_cmip_run_energy   2 0 0   100%
biobb_cmip / test / unitests / test_cmip / test_cmip_run.py (no function)   6 0 0   100%
biobb_cmip / utils / __init__.py (no function)   0 0 0   100%
biobb_cmip / utils / representation.py get_energies_byat   12 12 0   0%
biobb_cmip / utils / representation.py get_energies_byres   21 21 0   0%
biobb_cmip / utils / representation.py create_box_representation   1 1 0   0%
biobb_cmip / utils / representation.py _create_box_representation_file   14 14 0   0%
biobb_cmip / utils / representation.py _get_vertex_list   2 2 0   0%
biobb_cmip / utils / representation.py _pdb_coord_formatter   1 1 0   0%
biobb_cmip / utils / representation.py _get_atom_pair   1 1 0   0%
biobb_cmip / utils / representation.py (no function)   11 11 0   0%
Total     832 400 0   52%

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