Coverage report: 48%

Files Functions Classes

coverage.py v7.6.10, created at 2025-01-28 09:52 +0000

File function statements missing excluded coverage
biobb_cmip/__init__.py (no function) 4 0 0 100%
biobb_cmip/cmip/__init__.py (no function) 7 0 0 100%
biobb_cmip/cmip/cmip_ignore_residues.py CmipIgnoreResidues.__init__ 8 0 0 100%
biobb_cmip/cmip/cmip_ignore_residues.py CmipIgnoreResidues.launch 22 6 0 73%
biobb_cmip/cmip/cmip_ignore_residues.py cmip_ignore_residues 2 1 0 50%
biobb_cmip/cmip/cmip_ignore_residues.py main 9 9 0 0%
biobb_cmip/cmip/cmip_ignore_residues.py (no function) 16 1 0 94%
biobb_cmip/cmip/cmip_prepare_pdb.py CmipPreparePDB.__init__ 11 0 0 100%
biobb_cmip/cmip/cmip_prepare_pdb.py CmipPreparePDB.launch 20 2 0 90%
biobb_cmip/cmip/cmip_prepare_pdb.py cmip_prepare_pdb 2 1 0 50%
biobb_cmip/cmip/cmip_prepare_pdb.py main 9 9 0 0%
biobb_cmip/cmip/cmip_prepare_pdb.py (no function) 13 1 0 92%
biobb_cmip/cmip/cmip_prepare_structure.py CmipPrepareStructure.__init__ 6 0 0 100%
biobb_cmip/cmip/cmip_prepare_structure.py CmipPrepareStructure.launch 22 3 0 86%
biobb_cmip/cmip/cmip_prepare_structure.py cmip_prepare_structure 2 1 0 50%
biobb_cmip/cmip/cmip_prepare_structure.py main 10 10 0 0%
biobb_cmip/cmip/cmip_prepare_structure.py (no function) 21 1 0 95%
biobb_cmip/cmip/cmip_run.py CmipRun.__init__ 12 0 0 100%
biobb_cmip/cmip/cmip_run.py CmipRun.launch 100 64 0 36%
biobb_cmip/cmip/cmip_run.py cmip_run 2 1 0 50%
biobb_cmip/cmip/cmip_run.py main 21 21 0 0%
biobb_cmip/cmip/cmip_run.py (no function) 22 1 0 95%
biobb_cmip/cmip/cmip_titration.py CmipTitration.__init__ 16 16 0 0%
biobb_cmip/cmip/cmip_titration.py CmipTitration.launch 33 33 0 0%
biobb_cmip/cmip/cmip_titration.py cmip_titration 2 2 0 0%
biobb_cmip/cmip/cmip_titration.py main 11 11 0 0%
biobb_cmip/cmip/cmip_titration.py (no function) 20 1 0 95%
biobb_cmip/cmip/common.py get_grid 7 7 0 0%
biobb_cmip/cmip/common.py _get_grid_from_box_file 5 5 0 0%
biobb_cmip/cmip/common.py _get_grid_from_text 30 30 0 0%
biobb_cmip/cmip/common.py _get_grid_from_key_value 30 30 0 0%
biobb_cmip/cmip/common.py create_unique_file_path 8 2 0 75%
biobb_cmip/cmip/common.py write_cmip_pdb 8 0 0 100%
biobb_cmip/cmip/common.py get_topology_cmip_elements_canonical 23 1 0 96%
biobb_cmip/cmip/common.py get_topology_charges 13 1 0 92%
biobb_cmip/cmip/common.py Residue.__init__ 3 3 0 0%
biobb_cmip/cmip/common.py ResiduesDataLib.__init__ 9 9 0 0%
biobb_cmip/cmip/common.py ResiduesDataLib.getParams 4 4 0 0%
biobb_cmip/cmip/common.py get_pdb_charges 27 27 0 0%
biobb_cmip/cmip/common.py get_pdb_cmip_elements_canonical 27 27 0 0%
biobb_cmip/cmip/common.py get_pdb_total_charge 6 6 0 0%
biobb_cmip/cmip/common.py probe_params_grid 6 0 0 100%
biobb_cmip/cmip/common.py params_grid 10 3 0 70%
biobb_cmip/cmip/common.py params_preset 31 17 0 45%
biobb_cmip/cmip/common.py read_params_file 24 24 0 0%
biobb_cmip/cmip/common.py write_params_file 9 0 0 100%
biobb_cmip/cmip/common.py create_params_file 12 5 0 58%
biobb_cmip/cmip/common.py mark_residues 20 2 0 90%
biobb_cmip/cmip/common.py _mark_pdb_atom 3 0 0 100%
biobb_cmip/cmip/common.py _get_residue_code_in_list 14 4 0 71%
biobb_cmip/cmip/common.py _get_residue_code 1 0 0 100%
biobb_cmip/cmip/common.py _get_chain 1 0 0 100%
biobb_cmip/cmip/common.py _get_resnum 1 0 0 100%
biobb_cmip/cmip/common.py _is_atom 1 0 0 100%
biobb_cmip/cmip/common.py (no function) 39 0 0 100%
biobb_cmip/test/__init__.py (no function) 0 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_ignore_residues.py TestCmipIgnoreResidues.setup_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_ignore_residues.py TestCmipIgnoreResidues.teardown_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_ignore_residues.py TestCmipIgnoreResidues.test_cmip_ignore_residues 3 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_ignore_residues.py (no function) 6 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_pdb.py TestCmipPreparePDB.setup_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_pdb.py TestCmipPreparePDB.teardown_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_pdb.py TestCmipPreparePDB.test_cmip_prepare_pdb 3 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_pdb.py (no function) 6 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_structure.py TestCmipPrepareStructureTopology.setup_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_structure.py TestCmipPrepareStructureTopology.teardown_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_structure.py TestCmipPrepareStructureTopology.test_cmip_prepare_structure_Topology 3 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_prepare_structure.py (no function) 6 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_run.py TestCmipRunEnergy.setup_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_run.py TestCmipRunEnergy.teardown_class 1 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_run.py TestCmipRunEnergy.test_cmip_run_energy 2 0 0 100%
biobb_cmip/test/unitests/test_cmip/test_cmip_run.py (no function) 6 0 0 100%
biobb_cmip/utils/__init__.py (no function) 0 0 0 100%
biobb_cmip/utils/representation.py get_energies_byat 12 12 0 0%
biobb_cmip/utils/representation.py get_energies_byres 21 21 0 0%
biobb_cmip/utils/representation.py create_box_representation 1 1 0 0%
biobb_cmip/utils/representation.py _create_box_representation_file 14 14 0 0%
biobb_cmip/utils/representation.py _get_vertex_list 2 2 0 0%
biobb_cmip/utils/representation.py _pdb_coord_formatter 1 1 0 0%
biobb_cmip/utils/representation.py _get_atom_pair 1 1 0 0%
biobb_cmip/utils/representation.py (no function) 11 11 0 0%
Total   901 465 0 48%

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