| biobb_dna/__init__.py |
(no function) |
3 |
0 |
0 |
100% |
| biobb_dna/backbone/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| biobb_dna/backbone/bipopulations.py |
BIPopulations.__init__ |
9 |
0 |
0 |
100% |
| biobb_dna/backbone/bipopulations.py |
BIPopulations.launch |
42 |
6 |
0 |
86% |
| biobb_dna/backbone/bipopulations.py |
BIPopulations.get_xlabels |
13 |
2 |
0 |
85% |
| biobb_dna/backbone/bipopulations.py |
BIPopulations.get_angles_difference |
5 |
0 |
0 |
100% |
| biobb_dna/backbone/bipopulations.py |
bipopulations |
1 |
0 |
0 |
100% |
| biobb_dna/backbone/bipopulations.py |
main |
13 |
13 |
0 |
0% |
| biobb_dna/backbone/bipopulations.py |
(no function) |
22 |
1 |
0 |
95% |
| biobb_dna/backbone/canonicalag.py |
CanonicalAG.__init__ |
10 |
0 |
0 |
100% |
| biobb_dna/backbone/canonicalag.py |
CanonicalAG.launch |
44 |
6 |
0 |
86% |
| biobb_dna/backbone/canonicalag.py |
CanonicalAG.get_xlabels |
13 |
2 |
0 |
85% |
| biobb_dna/backbone/canonicalag.py |
CanonicalAG.check_alpha_gamma |
7 |
0 |
0 |
100% |
| biobb_dna/backbone/canonicalag.py |
CanonicalAG.fix_angles |
4 |
0 |
0 |
100% |
| biobb_dna/backbone/canonicalag.py |
canonicalag |
1 |
0 |
0 |
100% |
| biobb_dna/backbone/canonicalag.py |
main |
13 |
13 |
0 |
0% |
| biobb_dna/backbone/canonicalag.py |
(no function) |
23 |
1 |
0 |
96% |
| biobb_dna/backbone/puckering.py |
Puckering.__init__ |
10 |
0 |
0 |
100% |
| biobb_dna/backbone/puckering.py |
Puckering.launch |
40 |
6 |
0 |
85% |
| biobb_dna/backbone/puckering.py |
Puckering.get_xlabels |
13 |
2 |
0 |
85% |
| biobb_dna/backbone/puckering.py |
Puckering.check_puckering |
7 |
0 |
0 |
100% |
| biobb_dna/backbone/puckering.py |
Puckering.fix_angles |
3 |
0 |
0 |
100% |
| biobb_dna/backbone/puckering.py |
puckering |
1 |
0 |
0 |
100% |
| biobb_dna/backbone/puckering.py |
main |
11 |
11 |
0 |
0% |
| biobb_dna/backbone/puckering.py |
(no function) |
23 |
1 |
0 |
96% |
| biobb_dna/curvesplus/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| biobb_dna/curvesplus/biobb_canal.py |
Canal.__init__ |
20 |
0 |
0 |
100% |
| biobb_dna/curvesplus/biobb_canal.py |
Canal.launch |
39 |
13 |
0 |
67% |
| biobb_dna/curvesplus/biobb_canal.py |
biobb_canal |
1 |
0 |
0 |
100% |
| biobb_dna/curvesplus/biobb_canal.py |
main |
10 |
10 |
0 |
0% |
| biobb_dna/curvesplus/biobb_canal.py |
(no function) |
18 |
1 |
0 |
94% |
| biobb_dna/curvesplus/biobb_canion.py |
Canion.__init__ |
21 |
0 |
0 |
100% |
| biobb_dna/curvesplus/biobb_canion.py |
Canion.launch |
34 |
4 |
0 |
88% |
| biobb_dna/curvesplus/biobb_canion.py |
biobb_canion |
1 |
0 |
0 |
100% |
| biobb_dna/curvesplus/biobb_canion.py |
main |
11 |
11 |
0 |
0% |
| biobb_dna/curvesplus/biobb_canion.py |
(no function) |
18 |
1 |
0 |
94% |
| biobb_dna/curvesplus/biobb_curves.py |
Curves.__init__ |
19 |
0 |
0 |
100% |
| biobb_dna/curvesplus/biobb_curves.py |
Curves.launch |
49 |
10 |
0 |
80% |
| biobb_dna/curvesplus/biobb_curves.py |
biobb_curves |
1 |
0 |
0 |
100% |
| biobb_dna/curvesplus/biobb_curves.py |
main |
12 |
12 |
0 |
0% |
| biobb_dna/curvesplus/biobb_curves.py |
(no function) |
18 |
1 |
0 |
94% |
| biobb_dna/dna/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| biobb_dna/dna/dna_averages.py |
HelParAverages.__init__ |
11 |
0 |
0 |
100% |
| biobb_dna/dna/dna_averages.py |
HelParAverages.launch |
55 |
14 |
0 |
75% |
| biobb_dna/dna/dna_averages.py |
dna_averages |
1 |
0 |
0 |
100% |
| biobb_dna/dna/dna_averages.py |
main |
10 |
10 |
0 |
0% |
| biobb_dna/dna/dna_averages.py |
(no function) |
20 |
1 |
0 |
95% |
| biobb_dna/dna/dna_bimodality.py |
HelParBimodality.__init__ |
11 |
0 |
0 |
100% |
| biobb_dna/dna/dna_bimodality.py |
HelParBimodality.launch |
77 |
29 |
0 |
62% |
| biobb_dna/dna/dna_bimodality.py |
HelParBimodality.fit_to_model |
16 |
0 |
0 |
100% |
| biobb_dna/dna/dna_bimodality.py |
HelParBimodality.bayes_factor_criteria |
11 |
4 |
0 |
64% |
| biobb_dna/dna/dna_bimodality.py |
HelParBimodality.helguero_theorem |
4 |
4 |
0 |
0% |
| biobb_dna/dna/dna_bimodality.py |
dna_bimodality |
1 |
0 |
0 |
100% |
| biobb_dna/dna/dna_bimodality.py |
main |
11 |
11 |
0 |
0% |
| biobb_dna/dna/dna_bimodality.py |
(no function) |
27 |
1 |
0 |
96% |
| biobb_dna/dna/dna_timeseries.py |
HelParTimeSeries.__init__ |
26 |
5 |
0 |
81% |
| biobb_dna/dna/dna_timeseries.py |
HelParTimeSeries.launch |
53 |
7 |
0 |
87% |
| biobb_dna/dna/dna_timeseries.py |
dna_timeseries |
1 |
0 |
0 |
100% |
| biobb_dna/dna/dna_timeseries.py |
main |
9 |
9 |
0 |
0% |
| biobb_dna/dna/dna_timeseries.py |
(no function) |
21 |
1 |
0 |
95% |
| biobb_dna/interbp_correlations/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.__init__ |
9 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.launch |
77 |
6 |
0 |
92% |
| biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.circular |
7 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.circlineal |
10 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interbpcorr.py |
interbpcorr |
1 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interbpcorr.py |
main |
15 |
15 |
0 |
0% |
| biobb_dna/interbp_correlations/interbpcorr.py |
(no function) |
25 |
1 |
0 |
96% |
| biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.__init__ |
8 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.launch |
63 |
1 |
0 |
98% |
| biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.get_corr_method |
8 |
8 |
0 |
0% |
| biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.circular |
7 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.circlineal |
10 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interhpcorr.py |
interhpcorr |
1 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interhpcorr.py |
main |
15 |
15 |
0 |
0% |
| biobb_dna/interbp_correlations/interhpcorr.py |
(no function) |
23 |
1 |
0 |
96% |
| biobb_dna/interbp_correlations/interseqcorr.py |
InterSequenceCorrelation.__init__ |
10 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interseqcorr.py |
InterSequenceCorrelation.launch |
47 |
9 |
0 |
81% |
| biobb_dna/interbp_correlations/interseqcorr.py |
InterSequenceCorrelation.circular |
7 |
7 |
0 |
0% |
| biobb_dna/interbp_correlations/interseqcorr.py |
interseqcorr |
1 |
0 |
0 |
100% |
| biobb_dna/interbp_correlations/interseqcorr.py |
main |
10 |
10 |
0 |
0% |
| biobb_dna/interbp_correlations/interseqcorr.py |
(no function) |
21 |
1 |
0 |
95% |
| biobb_dna/intrabp_correlations/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.__init__ |
9 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.launch |
77 |
6 |
0 |
92% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.circular |
7 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.circlineal |
10 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
intrabpcorr |
1 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
main |
15 |
15 |
0 |
0% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
(no function) |
25 |
1 |
0 |
96% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.__init__ |
8 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.launch |
63 |
1 |
0 |
98% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.get_corr_method |
8 |
8 |
0 |
0% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.circular |
7 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.circlineal |
10 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
intrahpcorr |
1 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
main |
15 |
15 |
0 |
0% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
(no function) |
23 |
1 |
0 |
96% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.__init__ |
10 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.launch |
47 |
9 |
0 |
81% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.circular |
7 |
7 |
0 |
0% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
intraseqcorr |
1 |
0 |
0 |
100% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
main |
10 |
10 |
0 |
0% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
(no function) |
21 |
1 |
0 |
95% |
| biobb_dna/stiffness/__init__.py |
(no function) |
2 |
0 |
0 |
100% |
| biobb_dna/stiffness/average_stiffness.py |
AverageStiffness.__init__ |
11 |
0 |
0 |
100% |
| biobb_dna/stiffness/average_stiffness.py |
AverageStiffness.launch |
51 |
13 |
0 |
75% |
| biobb_dna/stiffness/average_stiffness.py |
average_stiffness |
1 |
0 |
0 |
100% |
| biobb_dna/stiffness/average_stiffness.py |
main |
10 |
10 |
0 |
0% |
| biobb_dna/stiffness/average_stiffness.py |
(no function) |
21 |
1 |
0 |
95% |
| biobb_dna/stiffness/basepair_stiffness.py |
BPStiffness.__init__ |
9 |
0 |
0 |
100% |
| biobb_dna/stiffness/basepair_stiffness.py |
BPStiffness.launch |
39 |
1 |
0 |
97% |
| biobb_dna/stiffness/basepair_stiffness.py |
basepair_stiffness |
1 |
0 |
0 |
100% |
| biobb_dna/stiffness/basepair_stiffness.py |
main |
15 |
15 |
0 |
0% |
| biobb_dna/stiffness/basepair_stiffness.py |
(no function) |
19 |
1 |
0 |
95% |
| biobb_dna/test/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.test_bipopulations |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
(no function) |
7 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.test_canonicalag |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
(no function) |
7 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.test_puckering |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_backbone/test_puckering.py |
(no function) |
7 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.test_helparcorrelation |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.test_sequencecorrelation |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.test_basepaircorrelation |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.test_helparcorrelation |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraSequenceCorrelation.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraSequenceCorrelation.test_sequencecorrelation |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.test_basepaircorrelation |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
(no function) |
31 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.test_canal |
5 |
1 |
0 |
80% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
(no function) |
7 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanal.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanal.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanal.test_canion |
5 |
1 |
0 |
80% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
(no function) |
7 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.test_curves |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
(no function) |
7 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.test_helparaverages |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
(no function) |
10 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.teardown_class |
2 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.test_helparbimodality |
6 |
1 |
0 |
83% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
(no function) |
7 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.test_helpartimeseries |
5 |
1 |
0 |
80% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
(no function) |
10 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.test_averagestiffness |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.setup_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.teardown_class |
1 |
0 |
0 |
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.test_basepairstiffness |
7 |
1 |
0 |
86% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
(no function) |
12 |
0 |
0 |
100% |
| biobb_dna/utils/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
| biobb_dna/utils/constants.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_dna/utils/loader.py |
read_series |
7 |
1 |
0 |
86% |
| biobb_dna/utils/loader.py |
load_data |
14 |
9 |
0 |
36% |
| biobb_dna/utils/loader.py |
(no function) |
6 |
0 |
0 |
100% |
| biobb_dna/utils/transform.py |
inverse_complement |
5 |
1 |
0 |
80% |
| biobb_dna/utils/transform.py |
(no function) |
1 |
0 |
0 |
100% |