| biobb_dna/__init__.py |
(no function) |
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(no function) |
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BIPopulations.__init__ |
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BIPopulations.launch |
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37 |
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BIPopulations.get_xlabels |
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BIPopulations.get_angles_difference |
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bipopulations |
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20 |
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CanonicalAG.__init__ |
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CanonicalAG.launch |
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CanonicalAG.get_xlabels |
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CanonicalAG.check_alpha_gamma |
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CanonicalAG.fix_angles |
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canonicalag |
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Puckering.__init__ |
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Puckering.launch |
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37 |
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Puckering.get_xlabels |
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Puckering.check_puckering |
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Puckering.fix_angles |
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puckering |
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| biobb_dna/curvesplus/__init__.py |
(no function) |
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6 |
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Canal.__init__ |
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Canal.launch |
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biobb_canal |
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Canion.__init__ |
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Canion.launch |
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34 |
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biobb_canion |
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(no function) |
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| biobb_dna/curvesplus/biobb_curves.py |
Curves.__init__ |
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19 |
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Curves.create_curvesplus_folder |
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Curves.launch |
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biobb_curves |
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CanalUnzip.__init__ |
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CanalUnzip.launch |
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43 |
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canal_unzip |
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(no function) |
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16 |
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(no function) |
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6 |
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HelParAverages.__init__ |
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11 |
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HelParAverages.launch |
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dna_averages |
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(no function) |
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18 |
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HelParBimodality.__init__ |
|
11 |
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HelParBimodality.launch |
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72 |
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HelParBimodality.fit_to_model |
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16 |
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0 |
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HelParBimodality.bayes_factor_criteria |
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HelParBimodality.helguero_theorem |
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4 |
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dna_bimodality |
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(no function) |
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24 |
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HelParTimeSeries.__init__ |
|
26 |
5 |
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HelParTimeSeries.launch |
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72 |
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dna_timeseries |
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21 |
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DnaTimeseriesUnzip.__init__ |
|
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0 |
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DnaTimeseriesUnzip.launch |
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44 |
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dna_timeseries_unzip |
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(no function) |
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5 |
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InterBasePairCorrelation.__init__ |
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9 |
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InterBasePairCorrelation.launch |
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76 |
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InterBasePairCorrelation.circular |
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InterBasePairCorrelation.circlineal |
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interbpcorr |
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(no function) |
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24 |
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| biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.__init__ |
|
8 |
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InterHelParCorrelation.launch |
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61 |
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InterHelParCorrelation.get_corr_method |
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8 |
8 |
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InterHelParCorrelation.circular |
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7 |
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0 |
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InterHelParCorrelation.circlineal |
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interhpcorr |
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1 |
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(no function) |
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21 |
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| biobb_dna/interbp_correlations/interseqcorr.py |
InterSequenceCorrelation.__init__ |
|
10 |
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0 |
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InterSequenceCorrelation.launch |
|
46 |
9 |
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InterSequenceCorrelation.circular |
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7 |
7 |
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interseqcorr |
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1 |
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0 |
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(no function) |
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20 |
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(no function) |
|
5 |
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0 |
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| biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.__init__ |
|
9 |
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0 |
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IntraBasePairCorrelation.launch |
|
76 |
6 |
0 |
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| biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.circular |
|
7 |
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0 |
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| biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.circlineal |
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10 |
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0 |
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| biobb_dna/intrabp_correlations/intrabpcorr.py |
intrabpcorr |
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1 |
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0 |
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100% |
| biobb_dna/intrabp_correlations/intrabpcorr.py |
(no function) |
|
24 |
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0 |
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96% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.__init__ |
|
8 |
0 |
0 |
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100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.launch |
|
61 |
1 |
0 |
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98% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.get_corr_method |
|
8 |
8 |
0 |
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0% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.circular |
|
7 |
0 |
0 |
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100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.circlineal |
|
10 |
0 |
0 |
|
100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
intrahpcorr |
|
1 |
0 |
0 |
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100% |
| biobb_dna/intrabp_correlations/intrahpcorr.py |
(no function) |
|
21 |
1 |
0 |
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95% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.__init__ |
|
10 |
0 |
0 |
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100% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.launch |
|
46 |
9 |
0 |
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| biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.circular |
|
7 |
7 |
0 |
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| biobb_dna/intrabp_correlations/intraseqcorr.py |
intraseqcorr |
|
1 |
0 |
0 |
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100% |
| biobb_dna/intrabp_correlations/intraseqcorr.py |
(no function) |
|
20 |
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| biobb_dna/stiffness/__init__.py |
(no function) |
|
4 |
0 |
0 |
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| biobb_dna/stiffness/average_stiffness.py |
AverageStiffness.__init__ |
|
11 |
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0 |
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AverageStiffness.launch |
|
49 |
13 |
0 |
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| biobb_dna/stiffness/average_stiffness.py |
average_stiffness |
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1 |
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0 |
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(no function) |
|
19 |
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| biobb_dna/stiffness/basepair_stiffness.py |
BPStiffness.__init__ |
|
9 |
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0 |
|
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| biobb_dna/stiffness/basepair_stiffness.py |
BPStiffness.launch |
|
37 |
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basepair_stiffness |
|
1 |
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0 |
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| biobb_dna/stiffness/basepair_stiffness.py |
(no function) |
|
18 |
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| biobb_dna/test/__init__.py |
(no function) |
|
0 |
0 |
0 |
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100% |
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TestBIPopulations.setup_class |
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1 |
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0 |
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| biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.teardown_class |
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1 |
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0 |
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100% |
| biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.test_bipopulations |
|
7 |
1 |
0 |
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86% |
| biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
(no function) |
|
7 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.setup_class |
|
1 |
0 |
0 |
|
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| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.teardown_class |
|
1 |
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0 |
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100% |
| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.test_canonicalag |
|
5 |
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0 |
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| biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.teardown_class |
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1 |
0 |
0 |
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| biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.test_puckering |
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5 |
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0 |
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| biobb_dna/test/unitests/test_backbone/test_puckering.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.teardown_class |
|
1 |
0 |
0 |
|
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| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.test_helparcorrelation |
|
5 |
0 |
0 |
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| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.setup_class |
|
1 |
0 |
0 |
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100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.test_sequencecorrelation |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.test_basepaircorrelation |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.test_helparcorrelation |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraSequenceCorrelation.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraSequenceCorrelation.test_sequencecorrelation |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.test_basepaircorrelation |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_correlation/test_correlation.py |
(no function) |
|
30 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.test_canal |
|
4 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
TestCanalUnzip.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
TestCanalUnzip.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
TestCanalUnzip.test_canal_unzip |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanion.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanion.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanion.test_canion |
|
4 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_canion.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.test_curves |
|
8 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_curvesplus/test_curves.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.test_helparaverages |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_averages.py |
(no function) |
|
9 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.teardown_class |
|
2 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.test_helparbimodality |
|
4 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_bimodality.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.test_helpartimeseries |
|
3 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries.py |
(no function) |
|
9 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
TestCanalUnzip.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
TestCanalUnzip.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
TestCanalUnzip.test_dna_timeseries_unzip |
|
8 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.test_averagestiffness |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.setup_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.teardown_class |
|
1 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.test_basepairstiffness |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
(no function) |
|
11 |
0 |
0 |
|
100% |
| biobb_dna/utils/__init__.py |
(no function) |
|
0 |
0 |
0 |
|
100% |
| biobb_dna/utils/common.py |
_from_string_to_list |
|
8 |
4 |
0 |
|
50% |
| biobb_dna/utils/common.py |
(no function) |
|
2 |
0 |
0 |
|
100% |
| biobb_dna/utils/constants.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| biobb_dna/utils/loader.py |
read_series |
|
7 |
1 |
0 |
|
86% |
| biobb_dna/utils/loader.py |
load_data |
|
14 |
9 |
0 |
|
36% |
| biobb_dna/utils/loader.py |
(no function) |
|
5 |
0 |
0 |
|
100% |
| biobb_dna/utils/transform.py |
inverse_complement |
|
5 |
1 |
0 |
|
80% |
| biobb_dna/utils/transform.py |
(no function) |
|
1 |
0 |
0 |
|
100% |