biobb_dna/__init__.py |
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biobb_dna/backbone/__init__.py |
(no function) |
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biobb_dna/backbone/bipopulations.py |
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biobb_dna/backbone/bipopulations.py |
BIPopulations.launch |
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BIPopulations.get_xlabels |
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biobb_dna/backbone/bipopulations.py |
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bipopulations |
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biobb_dna/backbone/canonicalag.py |
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biobb_dna/backbone/canonicalag.py |
CanonicalAG.launch |
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biobb_dna/backbone/canonicalag.py |
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biobb_dna/backbone/canonicalag.py |
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biobb_dna/backbone/canonicalag.py |
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biobb_dna/backbone/canonicalag.py |
canonicalag |
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biobb_dna/backbone/canonicalag.py |
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biobb_dna/backbone/canonicalag.py |
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Puckering.__init__ |
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Puckering.launch |
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biobb_dna/backbone/puckering.py |
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Puckering.check_puckering |
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puckering |
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biobb_dna/backbone/puckering.py |
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biobb_dna/curvesplus/__init__.py |
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biobb_dna/curvesplus/biobb_canal.py |
Canal.__init__ |
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biobb_dna/curvesplus/biobb_canal.py |
Canal.launch |
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biobb_canal |
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biobb_dna/curvesplus/biobb_canion.py |
Canion.__init__ |
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Canion.launch |
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biobb_canion |
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biobb_dna/curvesplus/biobb_canion.py |
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biobb_dna/curvesplus/biobb_curves.py |
Curves.__init__ |
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biobb_dna/curvesplus/biobb_curves.py |
Curves.create_curvesplus_folder |
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Curves.launch |
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biobb_curves |
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biobb_dna/curvesplus/canal_unzip.py |
CanalUnzip.__init__ |
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biobb_dna/curvesplus/canal_unzip.py |
CanalUnzip.launch |
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biobb_dna/curvesplus/canal_unzip.py |
canal_unzip |
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biobb_dna/curvesplus/canal_unzip.py |
main |
10 |
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biobb_dna/curvesplus/canal_unzip.py |
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biobb_dna/dna/__init__.py |
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0 |
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biobb_dna/dna/dna_averages.py |
HelParAverages.__init__ |
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biobb_dna/dna/dna_averages.py |
HelParAverages.launch |
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biobb_dna/dna/dna_averages.py |
dna_averages |
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main |
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biobb_dna/dna/dna_averages.py |
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biobb_dna/dna/dna_bimodality.py |
HelParBimodality.__init__ |
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HelParBimodality.launch |
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HelParBimodality.fit_to_model |
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biobb_dna/dna/dna_bimodality.py |
HelParBimodality.bayes_factor_criteria |
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biobb_dna/dna/dna_bimodality.py |
HelParBimodality.helguero_theorem |
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dna_bimodality |
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biobb_dna/dna/dna_bimodality.py |
main |
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biobb_dna/dna/dna_bimodality.py |
(no function) |
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biobb_dna/dna/dna_timeseries.py |
HelParTimeSeries.__init__ |
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5 |
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biobb_dna/dna/dna_timeseries.py |
HelParTimeSeries.launch |
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dna_timeseries |
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main |
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biobb_dna/dna/dna_timeseries.py |
(no function) |
22 |
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biobb_dna/dna/dna_timeseries_unzip.py |
DnaTimeseriesUnzip.__init__ |
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biobb_dna/dna/dna_timeseries_unzip.py |
DnaTimeseriesUnzip.launch |
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biobb_dna/dna/dna_timeseries_unzip.py |
dna_timeseries_unzip |
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biobb_dna/dna/dna_timeseries_unzip.py |
main |
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11 |
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biobb_dna/dna/dna_timeseries_unzip.py |
(no function) |
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biobb_dna/interbp_correlations/__init__.py |
(no function) |
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0 |
0 |
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biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.__init__ |
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biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.launch |
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biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.circular |
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biobb_dna/interbp_correlations/interbpcorr.py |
InterBasePairCorrelation.circlineal |
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biobb_dna/interbp_correlations/interbpcorr.py |
interbpcorr |
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biobb_dna/interbp_correlations/interbpcorr.py |
main |
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biobb_dna/interbp_correlations/interbpcorr.py |
(no function) |
25 |
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biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.__init__ |
8 |
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0 |
100% |
biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.launch |
61 |
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biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.get_corr_method |
8 |
8 |
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biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.circular |
7 |
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100% |
biobb_dna/interbp_correlations/interhpcorr.py |
InterHelParCorrelation.circlineal |
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100% |
biobb_dna/interbp_correlations/interhpcorr.py |
interhpcorr |
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biobb_dna/interbp_correlations/interhpcorr.py |
main |
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biobb_dna/interbp_correlations/interhpcorr.py |
(no function) |
22 |
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95% |
biobb_dna/interbp_correlations/interseqcorr.py |
InterSequenceCorrelation.__init__ |
10 |
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0 |
100% |
biobb_dna/interbp_correlations/interseqcorr.py |
InterSequenceCorrelation.launch |
46 |
9 |
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biobb_dna/interbp_correlations/interseqcorr.py |
InterSequenceCorrelation.circular |
7 |
7 |
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biobb_dna/interbp_correlations/interseqcorr.py |
interseqcorr |
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biobb_dna/interbp_correlations/interseqcorr.py |
main |
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biobb_dna/interbp_correlations/interseqcorr.py |
(no function) |
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biobb_dna/intrabp_correlations/__init__.py |
(no function) |
5 |
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0 |
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biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.__init__ |
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0 |
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biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.launch |
76 |
6 |
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92% |
biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.circular |
7 |
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0 |
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biobb_dna/intrabp_correlations/intrabpcorr.py |
IntraBasePairCorrelation.circlineal |
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biobb_dna/intrabp_correlations/intrabpcorr.py |
intrabpcorr |
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biobb_dna/intrabp_correlations/intrabpcorr.py |
main |
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biobb_dna/intrabp_correlations/intrabpcorr.py |
(no function) |
25 |
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biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.__init__ |
8 |
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0 |
100% |
biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.launch |
61 |
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98% |
biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.get_corr_method |
8 |
8 |
0 |
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biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.circular |
7 |
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100% |
biobb_dna/intrabp_correlations/intrahpcorr.py |
IntraHelParCorrelation.circlineal |
10 |
0 |
0 |
100% |
biobb_dna/intrabp_correlations/intrahpcorr.py |
intrahpcorr |
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biobb_dna/intrabp_correlations/intrahpcorr.py |
main |
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biobb_dna/intrabp_correlations/intrahpcorr.py |
(no function) |
22 |
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biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.__init__ |
10 |
0 |
0 |
100% |
biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.launch |
46 |
9 |
0 |
80% |
biobb_dna/intrabp_correlations/intraseqcorr.py |
IntraSequenceCorrelation.circular |
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7 |
0 |
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biobb_dna/intrabp_correlations/intraseqcorr.py |
intraseqcorr |
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biobb_dna/intrabp_correlations/intraseqcorr.py |
main |
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biobb_dna/intrabp_correlations/intraseqcorr.py |
(no function) |
21 |
1 |
0 |
95% |
biobb_dna/stiffness/__init__.py |
(no function) |
4 |
0 |
0 |
100% |
biobb_dna/stiffness/average_stiffness.py |
AverageStiffness.__init__ |
11 |
0 |
0 |
100% |
biobb_dna/stiffness/average_stiffness.py |
AverageStiffness.launch |
49 |
13 |
0 |
73% |
biobb_dna/stiffness/average_stiffness.py |
average_stiffness |
2 |
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0 |
50% |
biobb_dna/stiffness/average_stiffness.py |
main |
10 |
10 |
0 |
0% |
biobb_dna/stiffness/average_stiffness.py |
(no function) |
20 |
1 |
0 |
95% |
biobb_dna/stiffness/basepair_stiffness.py |
BPStiffness.__init__ |
9 |
0 |
0 |
100% |
biobb_dna/stiffness/basepair_stiffness.py |
BPStiffness.launch |
37 |
1 |
0 |
97% |
biobb_dna/stiffness/basepair_stiffness.py |
basepair_stiffness |
2 |
1 |
0 |
50% |
biobb_dna/stiffness/basepair_stiffness.py |
main |
15 |
15 |
0 |
0% |
biobb_dna/stiffness/basepair_stiffness.py |
(no function) |
19 |
1 |
0 |
95% |
biobb_dna/test/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.teardown_class |
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0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
TestBIPopulations.test_bipopulations |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_backbone/test_bipopulations.py |
(no function) |
7 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
TestCanonicalAlphaGamma.test_canonicalag |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_backbone/test_canonical_alpha_gamma.py |
(no function) |
7 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_backbone/test_puckering.py |
TestPuckering.test_puckering |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_backbone/test_puckering.py |
(no function) |
7 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterHelparCorrelation.test_helparcorrelation |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterSequenceCorrelation.test_sequencecorrelation |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestInterBasepairCorrelation.test_basepaircorrelation |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraHelparCorrelation.test_helparcorrelation |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraSequenceCorrelation.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraSequenceCorrelation.test_sequencecorrelation |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
TestIntraBasepairCorrelation.test_basepaircorrelation |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_correlation/test_correlation.py |
(no function) |
31 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canal.py |
TestCanal.test_canal |
5 |
1 |
0 |
80% |
biobb_dna/test/unitests/test_curvesplus/test_canal.py |
(no function) |
7 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
TestCanalUnzip.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
TestCanalUnzip.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
TestCanalUnzip.test_canal_unzip |
6 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canal_unzip.py |
(no function) |
6 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanal.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanal.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_canion.py |
TestCanal.test_canion |
5 |
1 |
0 |
80% |
biobb_dna/test/unitests/test_curvesplus/test_canion.py |
(no function) |
7 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_curvesplus/test_curves.py |
TestCurves.test_curves |
9 |
1 |
0 |
89% |
biobb_dna/test/unitests/test_curvesplus/test_curves.py |
(no function) |
7 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_averages.py |
TestAverages.test_helparaverages |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_dna/test_averages.py |
(no function) |
10 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.teardown_class |
2 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_bimodality.py |
TestBimodality.test_helparbimodality |
6 |
1 |
0 |
83% |
biobb_dna/test/unitests/test_dna/test_bimodality.py |
(no function) |
7 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_timeseries.py |
TestTimeSeries.test_helpartimeseries |
5 |
1 |
0 |
80% |
biobb_dna/test/unitests/test_dna/test_timeseries.py |
(no function) |
10 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
TestCanalUnzip.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
TestCanalUnzip.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
TestCanalUnzip.test_dna_timeseries_unzip |
8 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_dna/test_timeseries_unzip.py |
(no function) |
6 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestAvgStiffness.test_averagestiffness |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.setup_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.teardown_class |
1 |
0 |
0 |
100% |
biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
TestBasePairStiffness.test_basepairstiffness |
7 |
1 |
0 |
86% |
biobb_dna/test/unitests/test_stiffness/test_stiffness.py |
(no function) |
12 |
0 |
0 |
100% |
biobb_dna/utils/__init__.py |
(no function) |
0 |
0 |
0 |
100% |
biobb_dna/utils/common.py |
_from_string_to_list |
8 |
4 |
0 |
50% |
biobb_dna/utils/common.py |
(no function) |
2 |
0 |
0 |
100% |
biobb_dna/utils/constants.py |
(no function) |
6 |
0 |
0 |
100% |
biobb_dna/utils/loader.py |
read_series |
7 |
1 |
0 |
86% |
biobb_dna/utils/loader.py |
load_data |
14 |
9 |
0 |
36% |
biobb_dna/utils/loader.py |
(no function) |
5 |
0 |
0 |
100% |
biobb_dna/utils/transform.py |
inverse_complement |
5 |
1 |
0 |
80% |
biobb_dna/utils/transform.py |
(no function) |
1 |
0 |
0 |
100% |