Coverage report: 87%

Files Functions Classes

coverage.py v7.13.0, created at 2025-12-15 18:49 +0000

File function   statements missing excluded   coverage
biobb_dna / __init__.py (no function)   4 0 0   100%
biobb_dna / backbone / __init__.py (no function)   5 0 0   100%
biobb_dna / backbone / bipopulations.py BIPopulations.__init__   11 0 0   100%
biobb_dna / backbone / bipopulations.py BIPopulations.launch   37 6 0   84%
biobb_dna / backbone / bipopulations.py BIPopulations.get_xlabels   13 2 0   85%
biobb_dna / backbone / bipopulations.py BIPopulations.get_angles_difference   5 0 0   100%
biobb_dna / backbone / bipopulations.py bipopulations   1 0 0   100%
biobb_dna / backbone / bipopulations.py (no function)   20 1 0   95%
biobb_dna / backbone / canonicalag.py CanonicalAG.__init__   10 0 0   100%
biobb_dna / backbone / canonicalag.py CanonicalAG.launch   39 6 0   85%
biobb_dna / backbone / canonicalag.py CanonicalAG.get_xlabels   13 2 0   85%
biobb_dna / backbone / canonicalag.py CanonicalAG.check_alpha_gamma   7 0 0   100%
biobb_dna / backbone / canonicalag.py CanonicalAG.fix_angles   4 0 0   100%
biobb_dna / backbone / canonicalag.py canonicalag   1 0 0   100%
biobb_dna / backbone / canonicalag.py (no function)   21 1 0   95%
biobb_dna / backbone / puckering.py Puckering.__init__   10 0 0   100%
biobb_dna / backbone / puckering.py Puckering.launch   37 6 0   84%
biobb_dna / backbone / puckering.py Puckering.get_xlabels   13 2 0   85%
biobb_dna / backbone / puckering.py Puckering.check_puckering   7 0 0   100%
biobb_dna / backbone / puckering.py Puckering.fix_angles   3 0 0   100%
biobb_dna / backbone / puckering.py puckering   1 0 0   100%
biobb_dna / backbone / puckering.py (no function)   21 1 0   95%
biobb_dna / curvesplus / __init__.py (no function)   6 0 0   100%
biobb_dna / curvesplus / biobb_canal.py Canal.__init__   20 0 0   100%
biobb_dna / curvesplus / biobb_canal.py Canal.launch   35 12 0   66%
biobb_dna / curvesplus / biobb_canal.py biobb_canal   1 0 0   100%
biobb_dna / curvesplus / biobb_canal.py (no function)   16 1 0   94%
biobb_dna / curvesplus / biobb_canion.py Canion.__init__   21 0 0   100%
biobb_dna / curvesplus / biobb_canion.py Canion.launch   30 4 0   87%
biobb_dna / curvesplus / biobb_canion.py biobb_canion   1 0 0   100%
biobb_dna / curvesplus / biobb_canion.py (no function)   16 1 0   94%
biobb_dna / curvesplus / biobb_curves.py Curves.__init__   19 0 0   100%
biobb_dna / curvesplus / biobb_curves.py Curves.create_curvesplus_folder   5 5 0   0%
biobb_dna / curvesplus / biobb_curves.py Curves.launch   53 11 0   79%
biobb_dna / curvesplus / biobb_curves.py biobb_curves   1 0 0   100%
biobb_dna / curvesplus / biobb_curves.py (no function)   18 1 0   94%
biobb_dna / curvesplus / canal_unzip.py CanalUnzip.__init__   10 0 0   100%
biobb_dna / curvesplus / canal_unzip.py CanalUnzip.launch   43 18 0   58%
biobb_dna / curvesplus / canal_unzip.py canal_unzip   1 0 0   100%
biobb_dna / curvesplus / canal_unzip.py (no function)   16 1 0   94%
biobb_dna / dna / __init__.py (no function)   6 0 0   100%
biobb_dna / dna / dna_averages.py HelParAverages.__init__   11 0 0   100%
biobb_dna / dna / dna_averages.py HelParAverages.launch   53 15 0   72%
biobb_dna / dna / dna_averages.py dna_averages   1 0 0   100%
biobb_dna / dna / dna_averages.py (no function)   18 1 0   94%
biobb_dna / dna / dna_bimodality.py HelParBimodality.__init__   11 0 0   100%
biobb_dna / dna / dna_bimodality.py HelParBimodality.launch   72 27 0   62%
biobb_dna / dna / dna_bimodality.py HelParBimodality.fit_to_model   16 0 0   100%
biobb_dna / dna / dna_bimodality.py HelParBimodality.bayes_factor_criteria   11 4 0   64%
biobb_dna / dna / dna_bimodality.py HelParBimodality.helguero_theorem   4 4 0   0%
biobb_dna / dna / dna_bimodality.py dna_bimodality   1 0 0   100%
biobb_dna / dna / dna_bimodality.py (no function)   24 1 0   96%
biobb_dna / dna / dna_timeseries.py HelParTimeSeries.__init__   26 5 0   81%
biobb_dna / dna / dna_timeseries.py HelParTimeSeries.launch   72 16 0   78%
biobb_dna / dna / dna_timeseries.py dna_timeseries   1 0 0   100%
biobb_dna / dna / dna_timeseries.py (no function)   21 1 0   95%
biobb_dna / dna / dna_timeseries_unzip.py DnaTimeseriesUnzip.__init__   11 0 0   100%
biobb_dna / dna / dna_timeseries_unzip.py DnaTimeseriesUnzip.launch   44 15 0   66%
biobb_dna / dna / dna_timeseries_unzip.py dna_timeseries_unzip   1 0 0   100%
biobb_dna / dna / dna_timeseries_unzip.py (no function)   17 1 0   94%
biobb_dna / interbp_correlations / __init__.py (no function)   5 0 0   100%
biobb_dna / interbp_correlations / interbpcorr.py InterBasePairCorrelation.__init__   9 0 0   100%
biobb_dna / interbp_correlations / interbpcorr.py InterBasePairCorrelation.launch   76 6 0   92%
biobb_dna / interbp_correlations / interbpcorr.py InterBasePairCorrelation.circular   7 0 0   100%
biobb_dna / interbp_correlations / interbpcorr.py InterBasePairCorrelation.circlineal   10 0 0   100%
biobb_dna / interbp_correlations / interbpcorr.py interbpcorr   1 0 0   100%
biobb_dna / interbp_correlations / interbpcorr.py (no function)   24 1 0   96%
biobb_dna / interbp_correlations / interhpcorr.py InterHelParCorrelation.__init__   8 0 0   100%
biobb_dna / interbp_correlations / interhpcorr.py InterHelParCorrelation.launch   61 1 0   98%
biobb_dna / interbp_correlations / interhpcorr.py InterHelParCorrelation.get_corr_method   8 8 0   0%
biobb_dna / interbp_correlations / interhpcorr.py InterHelParCorrelation.circular   7 0 0   100%
biobb_dna / interbp_correlations / interhpcorr.py InterHelParCorrelation.circlineal   10 0 0   100%
biobb_dna / interbp_correlations / interhpcorr.py interhpcorr   1 0 0   100%
biobb_dna / interbp_correlations / interhpcorr.py (no function)   21 1 0   95%
biobb_dna / interbp_correlations / interseqcorr.py InterSequenceCorrelation.__init__   10 0 0   100%
biobb_dna / interbp_correlations / interseqcorr.py InterSequenceCorrelation.launch   46 9 0   80%
biobb_dna / interbp_correlations / interseqcorr.py InterSequenceCorrelation.circular   7 7 0   0%
biobb_dna / interbp_correlations / interseqcorr.py interseqcorr   1 0 0   100%
biobb_dna / interbp_correlations / interseqcorr.py (no function)   20 1 0   95%
biobb_dna / intrabp_correlations / __init__.py (no function)   5 0 0   100%
biobb_dna / intrabp_correlations / intrabpcorr.py IntraBasePairCorrelation.__init__   9 0 0   100%
biobb_dna / intrabp_correlations / intrabpcorr.py IntraBasePairCorrelation.launch   76 6 0   92%
biobb_dna / intrabp_correlations / intrabpcorr.py IntraBasePairCorrelation.circular   7 0 0   100%
biobb_dna / intrabp_correlations / intrabpcorr.py IntraBasePairCorrelation.circlineal   10 0 0   100%
biobb_dna / intrabp_correlations / intrabpcorr.py intrabpcorr   1 0 0   100%
biobb_dna / intrabp_correlations / intrabpcorr.py (no function)   24 1 0   96%
biobb_dna / intrabp_correlations / intrahpcorr.py IntraHelParCorrelation.__init__   8 0 0   100%
biobb_dna / intrabp_correlations / intrahpcorr.py IntraHelParCorrelation.launch   61 1 0   98%
biobb_dna / intrabp_correlations / intrahpcorr.py IntraHelParCorrelation.get_corr_method   8 8 0   0%
biobb_dna / intrabp_correlations / intrahpcorr.py IntraHelParCorrelation.circular   7 0 0   100%
biobb_dna / intrabp_correlations / intrahpcorr.py IntraHelParCorrelation.circlineal   10 0 0   100%
biobb_dna / intrabp_correlations / intrahpcorr.py intrahpcorr   1 0 0   100%
biobb_dna / intrabp_correlations / intrahpcorr.py (no function)   21 1 0   95%
biobb_dna / intrabp_correlations / intraseqcorr.py IntraSequenceCorrelation.__init__   10 0 0   100%
biobb_dna / intrabp_correlations / intraseqcorr.py IntraSequenceCorrelation.launch   46 9 0   80%
biobb_dna / intrabp_correlations / intraseqcorr.py IntraSequenceCorrelation.circular   7 7 0   0%
biobb_dna / intrabp_correlations / intraseqcorr.py intraseqcorr   1 0 0   100%
biobb_dna / intrabp_correlations / intraseqcorr.py (no function)   20 1 0   95%
biobb_dna / stiffness / __init__.py (no function)   4 0 0   100%
biobb_dna / stiffness / average_stiffness.py AverageStiffness.__init__   11 0 0   100%
biobb_dna / stiffness / average_stiffness.py AverageStiffness.launch   49 13 0   73%
biobb_dna / stiffness / average_stiffness.py average_stiffness   1 0 0   100%
biobb_dna / stiffness / average_stiffness.py (no function)   19 1 0   95%
biobb_dna / stiffness / basepair_stiffness.py BPStiffness.__init__   9 0 0   100%
biobb_dna / stiffness / basepair_stiffness.py BPStiffness.launch   37 1 0   97%
biobb_dna / stiffness / basepair_stiffness.py basepair_stiffness   1 0 0   100%
biobb_dna / stiffness / basepair_stiffness.py (no function)   18 1 0   94%
biobb_dna / test / __init__.py (no function)   0 0 0   100%
biobb_dna / test / unitests / test_backbone / test_bipopulations.py TestBIPopulations.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_backbone / test_bipopulations.py TestBIPopulations.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_backbone / test_bipopulations.py TestBIPopulations.test_bipopulations   7 1 0   86%
biobb_dna / test / unitests / test_backbone / test_bipopulations.py (no function)   7 0 0   100%
biobb_dna / test / unitests / test_backbone / test_canonical_alpha_gamma.py TestCanonicalAlphaGamma.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_backbone / test_canonical_alpha_gamma.py TestCanonicalAlphaGamma.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_backbone / test_canonical_alpha_gamma.py TestCanonicalAlphaGamma.test_canonicalag   7 1 0   86%
biobb_dna / test / unitests / test_backbone / test_canonical_alpha_gamma.py (no function)   7 0 0   100%
biobb_dna / test / unitests / test_backbone / test_puckering.py TestPuckering.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_backbone / test_puckering.py TestPuckering.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_backbone / test_puckering.py TestPuckering.test_puckering   7 1 0   86%
biobb_dna / test / unitests / test_backbone / test_puckering.py (no function)   7 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterHelparCorrelation.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterHelparCorrelation.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterHelparCorrelation.test_helparcorrelation   7 1 0   86%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterSequenceCorrelation.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterSequenceCorrelation.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterSequenceCorrelation.test_sequencecorrelation   7 1 0   86%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterBasepairCorrelation.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterBasepairCorrelation.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestInterBasepairCorrelation.test_basepaircorrelation   7 1 0   86%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraHelparCorrelation.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraHelparCorrelation.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraHelparCorrelation.test_helparcorrelation   7 1 0   86%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraSequenceCorrelation.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraSequenceCorrelation.test_sequencecorrelation   7 1 0   86%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraBasepairCorrelation.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraBasepairCorrelation.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_correlation / test_correlation.py TestIntraBasepairCorrelation.test_basepaircorrelation   7 1 0   86%
biobb_dna / test / unitests / test_correlation / test_correlation.py (no function)   31 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canal.py TestCanal.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canal.py TestCanal.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canal.py TestCanal.test_canal   5 1 0   80%
biobb_dna / test / unitests / test_curvesplus / test_canal.py (no function)   7 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canal_unzip.py TestCanalUnzip.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canal_unzip.py TestCanalUnzip.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canal_unzip.py TestCanalUnzip.test_canal_unzip   6 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canal_unzip.py (no function)   6 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canion.py TestCanal.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canion.py TestCanal.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_canion.py TestCanal.test_canion   5 1 0   80%
biobb_dna / test / unitests / test_curvesplus / test_canion.py (no function)   7 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_curves.py TestCurves.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_curves.py TestCurves.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_curvesplus / test_curves.py TestCurves.test_curves   9 1 0   89%
biobb_dna / test / unitests / test_curvesplus / test_curves.py (no function)   7 0 0   100%
biobb_dna / test / unitests / test_dna / test_averages.py TestAverages.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_dna / test_averages.py TestAverages.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_dna / test_averages.py TestAverages.test_helparaverages   7 1 0   86%
biobb_dna / test / unitests / test_dna / test_averages.py (no function)   10 0 0   100%
biobb_dna / test / unitests / test_dna / test_bimodality.py TestBimodality.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_dna / test_bimodality.py TestBimodality.teardown_class   2 0 0   100%
biobb_dna / test / unitests / test_dna / test_bimodality.py TestBimodality.test_helparbimodality   6 1 0   83%
biobb_dna / test / unitests / test_dna / test_bimodality.py (no function)   7 0 0   100%
biobb_dna / test / unitests / test_dna / test_timeseries.py TestTimeSeries.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_dna / test_timeseries.py TestTimeSeries.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_dna / test_timeseries.py TestTimeSeries.test_helpartimeseries   5 1 0   80%
biobb_dna / test / unitests / test_dna / test_timeseries.py (no function)   10 0 0   100%
biobb_dna / test / unitests / test_dna / test_timeseries_unzip.py TestCanalUnzip.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_dna / test_timeseries_unzip.py TestCanalUnzip.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_dna / test_timeseries_unzip.py TestCanalUnzip.test_dna_timeseries_unzip   8 0 0   100%
biobb_dna / test / unitests / test_dna / test_timeseries_unzip.py (no function)   6 0 0   100%
biobb_dna / test / unitests / test_stiffness / test_stiffness.py TestAvgStiffness.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_stiffness / test_stiffness.py TestAvgStiffness.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_stiffness / test_stiffness.py TestAvgStiffness.test_averagestiffness   7 1 0   86%
biobb_dna / test / unitests / test_stiffness / test_stiffness.py TestBasePairStiffness.setup_class   1 0 0   100%
biobb_dna / test / unitests / test_stiffness / test_stiffness.py TestBasePairStiffness.teardown_class   1 0 0   100%
biobb_dna / test / unitests / test_stiffness / test_stiffness.py TestBasePairStiffness.test_basepairstiffness   7 1 0   86%
biobb_dna / test / unitests / test_stiffness / test_stiffness.py (no function)   12 0 0   100%
biobb_dna / utils / __init__.py (no function)   0 0 0   100%
biobb_dna / utils / common.py _from_string_to_list   8 4 0   50%
biobb_dna / utils / common.py (no function)   2 0 0   100%
biobb_dna / utils / constants.py (no function)   6 0 0   100%
biobb_dna / utils / loader.py read_series   7 1 0   86%
biobb_dna / utils / loader.py load_data   14 9 0   36%
biobb_dna / utils / loader.py (no function)   5 0 0   100%
biobb_dna / utils / transform.py inverse_complement   5 1 0   80%
biobb_dna / utils / transform.py (no function)   1 0 0   100%
Total     2167 287 0   87%

No items found using the specified filter.